SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G53500 | AT | Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain | chr3:19834557-19836507 REVERSE LENGTH=284 | SoyBase | E_val: 3.00E-88 | ISS |
| GO:0000398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0008380 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing | SoyBase | N/A | ISS |
| GO:0030422 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of siRNA involved in RNA interference | SoyBase | N/A | ISS |
| GO:0035196 | GO-bp | Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG0106 | KOG | Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) | JGI | ISS | |
| PTHR10548 | Panther | ARGININE/SERINE-RICH SPLICING FACTOR | JGI | ISS | |
| PTHR10548:SF26 | Panther | ARGININE/SERINE-RICH ZINC KNUCKLE-CONTAINING PROTE | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF00098 | PFAM | Zinc knuckle | JGI | ISS | |
| UniRef100_B9SGV2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9SGV2_RICCO | SoyBase | E_val: 1.00E-103 | ISS |
| UniRef100_I1NA32 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NA32_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g35990 not represented in the dataset |
Glyma19g35990 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g33270 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g176200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g35990.2 sequence type=transcript gene model=Glyma19g35990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAAAAATCTATGGAGATACGTGGCAGTGGTCTTTGTATAAATAACAATAACATTAAATCGTAGGTAAGATTGTAAGATACCGATCCACTTCGAAAGGGTTAGGTTTACGAAGAAACACCAATCCTCTCCGAGAAGAAATCAACGATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTCTATGTTGGACGCTTGTCTTCGAGGACACGTTCCCGTGACCTGGAGCGTGTCTTCAGCAGATATGGAAGGTTTCTGAGGTTTTCTCTAAACCTGGAGGTCTTTGTTGGGAGGTTGGACTTGGTGGAATTGATGGAAATTCCTGTCGAGTGTTGACTTTGGCGATTCTTTCTGTAATGTTATTGCGTGTTTTTTATGGAAATGGCAACAATCACAAACTGGTGTTTAGTTCGTCTTTGAGGGGTGATGTATCATACAGTTCCAGTAGTTAAGTAATGATGGCCTTATTGTTTCTGGCAACCATTTCCGCAGAATTCGAGGTGTAGATATGAAGAATGATTTTGCCTTTGTTGAATTTAGCGATCCTCGGGATGCTGATGATGCTAGATATAGCTTGGATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGCCAAGGGGGGTCCTCGTGGTTCCCGGGAAAACTTGGGTCGGGGTCTACCTCCTGGATCTGGACGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGTTGTGGGGAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGCCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCGTCGTGGCAGAAGCCGGGATCGAAGCTACAGCCGAGACCGCAACTACAGCCGATCGAGATCTCCAGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGATCACAGAGTCCTGAGCCCTCCAAGATAAGGAAGCATAGCACATCACCTGATCAAAGCAGCCCACGGAAGAGAGGTGACCCGGCTCCTGGCAATGATAGGTTGGCCACTCTGCAAGATGGGTCTGACTACAGTGATGGTCCTAGAGGGAAAAGTAGAAGCCCTGCTAGCCCTGCAAGGGACCATGATGAGGGCAACTATGATAGCCCTAAAGCTAGTGGGCGTAGCCACAGCCCCAGCAGGAGCCCTAGGGAAGATGACAGGAGCCCCATTGATGAAGATGATGACAACAACCGTCGCTCAGGGTCACCTTGAAAAAAGAACTTTCTGATAAAATGAGATCAGGATGTGACCCAATTTGTATCTGCTTTGTTTATAAAATGCACTCCAGGTTAATTATGTGACAATTATTTATGAAAACATTTTATATATGCTATTTTTCAGATTCTTGCGGTCAAGCAACATGTGTGGCTTACCTAGAATATGAAGTGCATGGATTTGTTTCAATGTTTTGGCATAATTTAAACCAATATGAATTATTGTGAGAAATTTAAATTTGACATGTTTTGAATCCTTTCAGCTCGAATTATATAGATCTTAAG
>Glyma19g35990.1 sequence type=CDS gene model=Glyma19g35990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTCGCTATGATGATAAATATGGTAATACCCGCCTCTATGTTGGACGCTTGTCTTCGAGGACACGTTCCCGTGACCTGGAGCGTGTCTTCAGCAGATATGGAAGAATTCGAGGTGTAGATATGAAGAATGATTTTGCCTTTGTTGAATTTAGCGATCCTCGGGATGCTGATGATGCTAGATATAGCTTGGATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGCCAAGGGGGGTCCTCGTGGTTCCCGGGAAAACTTGGGTCGGGGTCTACCTCCTGGATCTGGACGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGTTGTGGGGAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGCCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCGTCGTGGCAGAAGCCGGGATCGAAGCTACAGCCGAGACCGCAACTACAGCCGATCGAGATCTCCAGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGATCACAGAGTCCTGAGCCCTCCAAGATAAGGAAGCATAGCACATCACCTGATCAAAGCAGCCCACGGAAGAGAGGTGACCCGGCTCCTGGCAATGATAGGTTGGCCACTCTGCAAGATGGGTCTGACTACAGTGATGGTCCTAGAGGGAAAAGTAGAAGCCCTGCTAGCCCTGCAAGGGACCATGATGAGGGCAACTATGATAGCCCTAAAGCTAGTGGGCGTAGCCACAGCCCCAGCAGGAGCCCTAGGGAAGATGACAGGAGCCCCATTGATGAAGATGATGACAACAACCGTCGCTCAGGGTCACCTTGA >Glyma19g35990.2 sequence type=CDS gene model=Glyma19g35990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAATGATTTTGCCTTTGTTGAATTTAGCGATCCTCGGGATGCTGATGATGCTAGATATAGCTTGGATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGCCAAGGGGGGTCCTCGTGGTTCCCGGGAAAACTTGGGTCGGGGTCTACCTCCTGGATCTGGACGATGCTTTAACTGTGGCATTGATGGTCATTGGGCCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGTTGTGGGGAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGCCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCGTCGTGGCAGAAGCCGGGATCGAAGCTACAGCCGAGACCGCAACTACAGCCGATCGAGATCTCCAGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGATCACAGAGTCCTGAGCCCTCCAAGATAAGGAAGCATAGCACATCACCTGATCAAAGCAGCCCACGGAAGAGAGGTGACCCGGCTCCTGGCAATGATAGGTTGGCCACTCTGCAAGATGGGTCTGACTACAGTGATGGTCCTAGAGGGAAAAGTAGAAGCCCTGCTAGCCCTGCAAGGGACCATGATGAGGGCAACTATGATAGCCCTAAAGCTAGTGGGCGTAGCCACAGCCCCAGCAGGAGCCCTAGGGAAGATGACAGGAGCCCCATTGATGAAGATGATGACAACAACCGTCGCTCAGGGTCACCTTGA
>Glyma19g35990.1 sequence type=predicted peptide gene model=Glyma19g35990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGRIRGVDMKNDFAFVEFSDPRDADDARYSLDGRDVEGSRIIVEFAKGGPRGSRENLGRGLPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKSSRHGRSLSRSPVRSHSPRRGRSRDRSYSRDRNYSRSRSPVRRERSPVSEDRSQSPEPSKIRKHSTSPDQSSPRKRGDPAPGNDRLATLQDGSDYSDGPRGKSRSPASPARDHDEGNYDSPKASGRSHSPSRSPREDDRSPIDEDDDNNRRSGSP* >Glyma19g35990.2 sequence type=predicted peptide gene model=Glyma19g35990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKNDFAFVEFSDPRDADDARYSLDGRDVEGSRIIVEFAKGGPRGSRENLGRGLPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKSSRHGRSLSRSPVRSHSPRRGRSRDRSYSRDRNYSRSRSPVRRERSPVSEDRSQSPEPSKIRKHSTSPDQSSPRKRGDPAPGNDRLATLQDGSDYSDGPRGKSRSPASPARDHDEGNYDSPKASGRSHSPSRSPREDDRSPIDEDDDNNRRSGSP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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