Glyma19g35940 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g35940

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43366269
stop:	43368527
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18520	AT	Annotation by Michelle Graham. TAIR10: Lung seven transmembrane receptor family protein \| chr5:6145027-6146349 FORWARD LENGTH=440	SoyBase	E_val: 0	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0010015	GO-bp	Annotation by Michelle Graham. GO Biological Process: root morphogenesis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
KOG2569	KOG	G protein-coupled seven transmembrane receptor	JGI		ISS
PTHR21229	Panther	LUNG SEVEN TRANSMEMBRANE RECEPTOR	JGI		ISS
PTHR21229:SF2	Panther	LUNG SEVEN TRANSMEMBRANE RECEPTOR	JGI		ISS
PF06814	PFAM	Lung seven transmembrane receptor	JGI		ISS
UniRef100_G7L0Q1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein GPR107 n=1 Tax=Medicago truncatula RepID=G7L0Q1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1NA23	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1NA23_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g35940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35940

Paralog	Evidence	Comments
Glyma03g33220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g175700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g35940

Limit To All Plant Sequences

>Glyma19g35940.2   sequence type=transcript   gene model=Glyma19g35940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCACGTCGTCGTCCTCAGTCAGATCTACGATAATGGTAAGATGGTATCCCCTTAAATTCTGAAAGAAAAAGCGCAACAATGTCCATGGCCAAAATGCGACCAGCATTGCCCCTTCTGCTCCTCCTCCTCCTCTTCCTGTTCTCTCCCTCCGCGGCGGAGATAAAGTCGCTGACGATAAACTCCGACAGCCGCCCCATGATCCTCTTGGAGAAATTCGGGTTCACGCACAAGGGCCACGTGTCCATCGCCGTCTCCTCTGTCTCCGTGGGCGTGCTCTCCTCCTCGGTGCAACCAGAATCCTCTCGCCTGGGTTTCTTCCTCCTGAACGAAGAAGCCCTCCTCCAGGTCCTGATGGAGATCCAGCAGAACCCCTCTTTCTGCGTCTTGGACTCCCACTACATCCTCCTCCTCTTCACCTTCCGCGACCTCTCCCCTCCCCCCTTTGCCTCCTTCAACCGCTCCTACCCCGTCACCTCCCCCAACGAATACTCCCTCTTCTTCGCCAACTGCGCACCGGAAACCTCCGTCTCCATGTCCCTCCACACTGAGTCCTACAACCTCGACTCCGACTCCTCCCGCGACTACCTCTCCGCCGGCCAAACTCACCTCCCCTCTCTCTACTTCCTCTTCTTCCTCACCTACCTCTCCTTCTTCTCCCTCTGGCTCTACATCTACTTCTCCAACAAACTCTCCGTTCACCCCATTCACCTCTTAATGTCTCTCCTTCTTCTCGTGAAGGCTCTTAACCTAATCTGCGCCGCCGAGGATAAGCATTACGTCAAGGTCTCGGGTCTTCCCCATGGATGGGATGTTCTGTTCTACATCTTCCAGTTTATCCGCGTCGTTTTGCTCTTTACTGTAATCGTTTTGATAGGTACAGGATGGTCTTTTCTGAAACCCTTTTTGCAGGACAGGGAGAAGAAGGTGCTGATGATTGTCATCCCGCTTCAGGTTCTGGCCAATTTGGCTTCCGTTGTGATCGGGGAAACAGGACCTTTCATCAAAGACTGGGTTACTTGGAATCAGATTTTCTTGCTTGTGGATATTATCTGCTGTTGTGCCATTATTTTCCCTATTGTATGGTCCATTAGATCGCTGAGAGAGACTTCCAAAACCGATGGGAAGGCTTCGAGGAATTTGGCCAAGTTGACTCTGTTTAGACAGTTCTACATTGTTGTTATTGGGTACTTGTATTTCACCAGAATAGTGGTGTTCGCCTTGAGGACGATTGCGGCTTATAAGTACCAATGGGTGAGCAATGCTGCAGAGGAGACCGCGAGTCTTGCGTTTTATGTTGTCATGTTCTACATGTTCAGACCTGTGGAGAAGAACGAGTACTTTGTGCTTGATGAGGAGGAAGAGGAGGCCGCGGAAATGGCGCTCAAGGATGAAGAGTTTGAGCTTTGATTTTGAAGACTCCCACTACGCTACTTAATTACATTACACCCCCCCTTTATACCCTTCTGCTGTTAGAGAAGAAAAGTGTGTTCACAAGGGAATACTGCCTCTATGTTTAGCTACTGCTGCTTCTTTTGCGGGATAGGAAAAAGAAACACTTAAAAGGAGAAGAAAATAGGAAGGAAAAATGCATTGAATTTTTCCCACAAGCTAAAATTAACTTGTATGATAATGGAATGTTGGTAGACACAATAACTAGAAATATTGTCACCACTCTAAACTGTTTTGGGTACAATATATTGGTGAAGGTTGTGAAATGTTAGAAAACCAACCCATGTGTAGGAAATAAGGAAACTTTTAGTGAGTGGTGACACATTTGAACTAGAATTTGGGTATTTTGTATCCGGTCCAGAAAATCGTTTTGTTTAAAGACAATAACAACACATTAACTTCGTGGGATTGCAAGGAAAAAAATGTTGGGAGAAATTGTAGTTGTATTGGATTGGTAAAATTGTAAATTTGGTCAACTTATTTGTTTCAGAATTTGATTTTAGTCCCCCTA

Coding sequences of Glyma19g35940

Limit To All Plant Sequences

>Glyma19g35940.1   sequence type=CDS   gene model=Glyma19g35940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAATGCGACCAGCATTGCCCCTTCTGCTCCTCCTCCTCCTCTTCCTGTTCTCTCCCTCCGCGGCGGAGATAAAGTCGCTGACGATAAACTCCGACAGCCGCCCCATGATCCTCTTGGAGAAATTCGGGTTCACGCACAAGGGCCACGTGTCCATCGCCGTCTCCTCTGTCTCCGTGGGCGTGCTCTCCTCCTCGGTGCAACCAGAATCCTCTCGCCTGGGTTTCTTCCTCCTGAACGAAGAAGCCCTCCTCCAGGTCCTGATGGAGATCCAGCAGAACCCCTCTTTCTGCGTCTTGGACTCCCACTACATCCTCCTCCTCTTCACCTTCCGCGACCTCTCCCCTCCCCCCTTTGCCTCCTTCAACCGCTCCTACCCCGTCACCTCCCCCAACGAATACTCCCTCTTCTTCGCCAACTGCGCACCGGAAACCTCCGTCTCCATGTCCCTCCACACTGAGTCCTACAACCTCGACTCCGACTCCTCCCGCGACTACCTCTCCGCCGGCCAAACTCACCTCCCCTCTCTCTACTTCCTCTTCTTCCTCACCTACCTCTCCTTCTTCTCCCTCTGGCTCTACATCTACTTCTCCAACAAACTCTCCGTTCACCCCATTCACCTCTTAATGTCTCTCCTTCTTCTCGTGAAGGCTCTTAACCTAATCTGCGCCGCCGAGGATAAGCATTACGTCAAGGTCTCGGGTCTTCCCCATGGATGGGATGTTCTGTTCTACATCTTCCAGTTTATCCGCGTCGTTTTGCTCTTTACTGTAATCGTTTTGATAGGTACAGGATGGTCTTTTCTGAAACCCTTTTTGCAGGACAGGGAGAAGAAGGTGCTGATGATTGTCATCCCGCTTCAGGTTCTGGCCAATTTGGCTTCCGTTGTGATCGGGGAAACAGGACCTTTCATCAAAGACTGGGTTACTTGGAATCAGATTTTCTTGCTTGTGGATATTATCTGCTGTTGTGCCATTATTTTCCCTATTGTATGGTCCATTAGATCGCTGAGAGAGACTTCCAAAACCGATGGGAAGGCTTCGAGGAATTTGGCCAAGTTGACTCTGTTTAGACAGTTCTACATTGTTGTTATTGGGTACTTGTATTTCACCAGAATAGTGGTGTTCGCCTTGAGGACGATTGCGGCTTATAAGTACCAATGGGTGAGCAATGCTGCAGAGGAGACCGCGAGTCTTGCGTTTTATGTTGTCATGTTCTACATGTTCAGACCTGTGGAGAAGAACGAGTACTTTGTGCTTGATGAGGAGGAAGAGGAGGCCGCGGAAATGGCGCTCAAGGATGAAGAGTTTGAGCTTTGA

>Glyma19g35940.2   sequence type=CDS   gene model=Glyma19g35940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCATGGCCAAAATGCGACCAGCATTGCCCCTTCTGCTCCTCCTCCTCCTCTTCCTGTTCTCTCCCTCCGCGGCGGAGATAAAGTCGCTGACGATAAACTCCGACAGCCGCCCCATGATCCTCTTGGAGAAATTCGGGTTCACGCACAAGGGCCACGTGTCCATCGCCGTCTCCTCTGTCTCCGTGGGCGTGCTCTCCTCCTCGGTGCAACCAGAATCCTCTCGCCTGGGTTTCTTCCTCCTGAACGAAGAAGCCCTCCTCCAGGTCCTGATGGAGATCCAGCAGAACCCCTCTTTCTGCGTCTTGGACTCCCACTACATCCTCCTCCTCTTCACCTTCCGCGACCTCTCCCCTCCCCCCTTTGCCTCCTTCAACCGCTCCTACCCCGTCACCTCCCCCAACGAATACTCCCTCTTCTTCGCCAACTGCGCACCGGAAACCTCCGTCTCCATGTCCCTCCACACTGAGTCCTACAACCTCGACTCCGACTCCTCCCGCGACTACCTCTCCGCCGGCCAAACTCACCTCCCCTCTCTCTACTTCCTCTTCTTCCTCACCTACCTCTCCTTCTTCTCCCTCTGGCTCTACATCTACTTCTCCAACAAACTCTCCGTTCACCCCATTCACCTCTTAATGTCTCTCCTTCTTCTCGTGAAGGCTCTTAACCTAATCTGCGCCGCCGAGGATAAGCATTACGTCAAGGTCTCGGGTCTTCCCCATGGATGGGATGTTCTGTTCTACATCTTCCAGTTTATCCGCGTCGTTTTGCTCTTTACTGTAATCGTTTTGATAGGTACAGGATGGTCTTTTCTGAAACCCTTTTTGCAGGACAGGGAGAAGAAGGTGCTGATGATTGTCATCCCGCTTCAGGTTCTGGCCAATTTGGCTTCCGTTGTGATCGGGGAAACAGGACCTTTCATCAAAGACTGGGTTACTTGGAATCAGATTTTCTTGCTTGTGGATATTATCTGCTGTTGTGCCATTATTTTCCCTATTGTATGGTCCATTAGATCGCTGAGAGAGACTTCCAAAACCGATGGGAAGGCTTCGAGGAATTTGGCCAAGTTGACTCTGTTTAGACAGTTCTACATTGTTGTTATTGGGTACTTGTATTTCACCAGAATAGTGGTGTTCGCCTTGAGGACGATTGCGGCTTATAAGTACCAATGGGTGAGCAATGCTGCAGAGGAGACCGCGAGTCTTGCGTTTTATGTTGTCATGTTCTACATGTTCAGACCTGTGGAGAAGAACGAGTACTTTGTGCTTGATGAGGAGGAAGAGGAGGCCGCGGAAATGGCGCTCAAGGATGAAGAGTTTGAGCTTTGA

Predicted protein sequences of Glyma19g35940

Limit To All Plant Sequences

>Glyma19g35940.1   sequence type=predicted peptide   gene model=Glyma19g35940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKMRPALPLLLLLLLFLFSPSAAEIKSLTINSDSRPMILLEKFGFTHKGHVSIAVSSVSVGVLSSSVQPESSRLGFFLLNEEALLQVLMEIQQNPSFCVLDSHYILLLFTFRDLSPPPFASFNRSYPVTSPNEYSLFFANCAPETSVSMSLHTESYNLDSDSSRDYLSAGQTHLPSLYFLFFLTYLSFFSLWLYIYFSNKLSVHPIHLLMSLLLLVKALNLICAAEDKHYVKVSGLPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQDREKKVLMIVIPLQVLANLASVVIGETGPFIKDWVTWNQIFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKASRNLAKLTLFRQFYIVVIGYLYFTRIVVFALRTIAAYKYQWVSNAAEETASLAFYVVMFYMFRPVEKNEYFVLDEEEEEAAEMALKDEEFEL*

>Glyma19g35940.2   sequence type=predicted peptide   gene model=Glyma19g35940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMAKMRPALPLLLLLLLFLFSPSAAEIKSLTINSDSRPMILLEKFGFTHKGHVSIAVSSVSVGVLSSSVQPESSRLGFFLLNEEALLQVLMEIQQNPSFCVLDSHYILLLFTFRDLSPPPFASFNRSYPVTSPNEYSLFFANCAPETSVSMSLHTESYNLDSDSSRDYLSAGQTHLPSLYFLFFLTYLSFFSLWLYIYFSNKLSVHPIHLLMSLLLLVKALNLICAAEDKHYVKVSGLPHGWDVLFYIFQFIRVVLLFTVIVLIGTGWSFLKPFLQDREKKVLMIVIPLQVLANLASVVIGETGPFIKDWVTWNQIFLLVDIICCCAIIFPIVWSIRSLRETSKTDGKASRNLAKLTLFRQFYIVVIGYLYFTRIVVFALRTIAAYKYQWVSNAAEETASLAFYVVMFYMFRPVEKNEYFVLDEEEEEAAEMALKDEEFEL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain