SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G53540 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). | chr3:19846805 | SoyBase | E_val: 1.00E-47 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| PTHR21726 | Panther | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED | JGI | ISS | |
| PTHR21726:SF19 | Panther | UNKNOWN PROTEIN | JGI | ISS | |
| UniRef100_G7JWH0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA repair protein RAD51-like protein n=1 Tax=Medicago truncatula RepID=G7JWH0_MEDTR | SoyBase | E_val: 4.00E-57 | ISS |
| UniRef100_I1JPF1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPF1_SOYBN | SoyBase | E_val: 2.00E-146 | ISS |
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Glyma19g35840 not represented in the dataset |
Glyma19g35840 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g33130 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g174800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g35840.2 sequence type=CDS gene model=Glyma19g35840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGTTATCAGTTGGGTCTTCCAGTAGAAATTCTGAACCCTTGCAACCTCCTGTATCTGGACTTGAATCTGCATGCTGTAAAGATGCAGATCAACCCAGTCCAGTCTCAGTGCTAGAATCTTCTTTTACAGATGATCTGTCATCTTGTTCTGATTGTTTTGAAAGTCTCAATGTTGACATACAAGGGCTTCGAATGCAACTCCAGTTGCTGAAGCTAGAATCTGAAGAATTTGTGGATGAACCTGTGCTAATTCAAAGTGATGAAGACGGTGGGGAGGCATCTACTGGAATTTCAGAAGACAATGAATTGCATAAGACTGGAGATAGTTGGGAGTCCTCCTACATGATTGATGTCTTGTATGAATCTGGTATCGATAGAGCTCAGCCTGATGCATTTTTGGAAGTTTGGGATTCTCAGGAATGCCCTGTTAGTCTTTCAGTGTTTGATGAACTTGAAAAGAGGTACTCTGATTGGACTAATTGTCCAAGGTCTGAAAGGAGATTGCTTTTTGATCGTATAAATTCGGGAATTATCAGTCTAAACGAGCAATTCATGGGGGTACAGCCATGGGTAAGCCCTACTACAGCCACAAATCTTTGTTCTAAATTGATTAAAAATGGACTCCAAGACGGTCTATACAGTATGCTGGGGAGCCAAGGAAAAGTAAAGGATACCGCACTGGGGAAGGTGCTGGTTAGCGAAATGCAGTGGTTGAACTTAAGAGATGACATTAATGGAATAGGTAGGGAAGTTGAGAGCTTGCTGCTAGATGATCTAGTGACAGAGATAGCCGTTACATAG
>Glyma19g35840.2 sequence type=predicted peptide gene model=Glyma19g35840 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ELSVGSSSRNSEPLQPPVSGLESACCKDADQPSPVSVLESSFTDDLSSCSDCFESLNVDIQGLRMQLQLLKLESEEFVDEPVLIQSDEDGGEASTGISEDNELHKTGDSWESSYMIDVLYESGIDRAQPDAFLEVWDSQECPVSLSVFDELEKRYSDWTNCPRSERRLLFDRINSGIISLNEQFMGVQPWVSPTTATNLCSKLIKNGLQDGLYSMLGSQGKVKDTALGKVLVSEMQWLNLRDDINGIGREVESLLLDDLVTEIAVT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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