Glyma19g35840 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g35840

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43293048
stop:	43294512
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53540	AT	Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins in 206 species: Archae - 2; Bacteria - 409; Metazoa - 304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes - 485 (source: NCBI BLink). \| chr3:19846805	SoyBase	E_val: 1.00E-47	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
PTHR21726	Panther	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED	JGI		ISS
PTHR21726:SF19	Panther	UNKNOWN PROTEIN	JGI		ISS
UniRef100_G7JWH0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA repair protein RAD51-like protein n=1 Tax=Medicago truncatula RepID=G7JWH0_MEDTR	SoyBase	E_val: 4.00E-57	ISS
UniRef100_I1JPF1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JPF1_SOYBN	SoyBase	E_val: 2.00E-146	ISS

Expression Patterns of Glyma19g35840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35840

Paralog	Evidence	Comments
Glyma03g33130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g174800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g35840

Limit To All Plant Sequences

>Glyma19g35840.2   sequence type=CDS   gene model=Glyma19g35840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGTTATCAGTTGGGTCTTCCAGTAGAAATTCTGAACCCTTGCAACCTCCTGTATCTGGACTTGAATCTGCATGCTGTAAAGATGCAGATCAACCCAGTCCAGTCTCAGTGCTAGAATCTTCTTTTACAGATGATCTGTCATCTTGTTCTGATTGTTTTGAAAGTCTCAATGTTGACATACAAGGGCTTCGAATGCAACTCCAGTTGCTGAAGCTAGAATCTGAAGAATTTGTGGATGAACCTGTGCTAATTCAAAGTGATGAAGACGGTGGGGAGGCATCTACTGGAATTTCAGAAGACAATGAATTGCATAAGACTGGAGATAGTTGGGAGTCCTCCTACATGATTGATGTCTTGTATGAATCTGGTATCGATAGAGCTCAGCCTGATGCATTTTTGGAAGTTTGGGATTCTCAGGAATGCCCTGTTAGTCTTTCAGTGTTTGATGAACTTGAAAAGAGGTACTCTGATTGGACTAATTGTCCAAGGTCTGAAAGGAGATTGCTTTTTGATCGTATAAATTCGGGAATTATCAGTCTAAACGAGCAATTCATGGGGGTACAGCCATGGGTAAGCCCTACTACAGCCACAAATCTTTGTTCTAAATTGATTAAAAATGGACTCCAAGACGGTCTATACAGTATGCTGGGGAGCCAAGGAAAAGTAAAGGATACCGCACTGGGGAAGGTGCTGGTTAGCGAAATGCAGTGGTTGAACTTAAGAGATGACATTAATGGAATAGGTAGGGAAGTTGAGAGCTTGCTGCTAGATGATCTAGTGACAGAGATAGCCGTTACATAG

Predicted protein sequences of Glyma19g35840

Limit To All Plant Sequences

>Glyma19g35840.2   sequence type=predicted peptide   gene model=Glyma19g35840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ELSVGSSSRNSEPLQPPVSGLESACCKDADQPSPVSVLESSFTDDLSSCSDCFESLNVDIQGLRMQLQLLKLESEEFVDEPVLIQSDEDGGEASTGISEDNELHKTGDSWESSYMIDVLYESGIDRAQPDAFLEVWDSQECPVSLSVFDELEKRYSDWTNCPRSERRLLFDRINSGIISLNEQFMGVQPWVSPTTATNLCSKLIKNGLQDGLYSMLGSQGKVKDTALGKVLVSEMQWLNLRDDINGIGREVESLLLDDLVTEIAVT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain