Glyma19g35810 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g35810

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43279505
stop:	43281105
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G55240	AT	Annotation by Michelle Graham. TAIR10: Plant protein 1589 of unknown function \| chr3:20473876-20474705 REVERSE LENGTH=95	SoyBase	E_val: 6.00E-39	ISS
GO:0032502	GO-bp	Annotation by Michelle Graham. GO Biological Process: developmental process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF09713	PFAM	Plant protein 1589 of unknown function (A thal 3526)	JGI		ISS
UniRef100_G7KVN5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plant-specific domain TIGR01589 family protein n=1 Tax=Medicago truncatula RepID=G7KVN5_MEDTR	SoyBase	E_val: 4.00E-36	ISS
UniRef100_I1NA13	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NA13_SOYBN	SoyBase	E_val: 5.00E-59	ISS

Expression Patterns of Glyma19g35810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35810

Paralog	Evidence	Comments
Glyma03g33110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g174600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g35810

Limit To All Plant Sequences

>Glyma19g35810.2   sequence type=transcript   gene model=Glyma19g35810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCATTAATAATTTCTTTTGTTTCTTTTTGGTGGAATACATATATAAGTTCTGATGATGAAGGTATATATATGCACACATAAATATATATAATATAATTATAATACATATGTGTAGGTGCACCGTCTGATAGAGGAGTGTATCCTATTCAACATGAGCAAAGAAGAGTGCATGGAAGCTCTTTCCAAACATGCAAATATCAAGCCTGTTATTACCTCCACCGTTTGGAAGGAGTTAGAGAAGGAGAACAAGGAGTTCTTCGAGGCATACACGAGGAGCAGAGCAGAGAGAGCTTCGGAGAGAGAGACAAGGCAAAGGATCCAGAGCGTGGTTTCAGATTCTTCCAAAGAACGAATTTAGATTTCAGACGCAACCAAATCAAGGCTAATCGTCAAATAAATTAACGAAGAAGAGGACGAACATGGTTGTTTATGTAATAATACCCCAATCCAAGGGTAATAGTGACATGACCACGTTAAACCATATTGGACCAAGGGACAACATCGTTGATTTGTCCCAAGATGTAGAAGTTGAAGTCACCACTCTACACTGACTGGAAGAGTTTGACATGGCACACACAAGTGTCGTGCTATATAAATAATTTTTTAAGAAAAAAATGTGTGTTAGATTCGATGTACATATAAATTTAAATAATAAATTATTATTAAATATTCTATCGTTTGCATATTTT

Coding sequences of Glyma19g35810

Limit To All Plant Sequences

>Glyma19g35810.1   sequence type=CDS   gene model=Glyma19g35810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACTCTTCTTCCTCTGCTGCTTATATCCGCCTGGTGCACCGTCTGATAGAGGAGTGTATCCTATTCAACATGAGCAAAGAAGAGTGCATGGAAGCTCTTTCCAAACATGCAAATATCAAGCCTGTTATTACCTCCACCGTTTGGAAGGAGTTAGAGAAGGAGAACAAGGAGTTCTTCGAGGCATACACGAGGAGCAGAGCAGAGAGAGCTTCGGAGAGAGAGACAAGGCAAAGGATCCAGAGCGTGGTTTCAGATTCTTCCAAAGAACGAATTTAG

>Glyma19g35810.2   sequence type=CDS   gene model=Glyma19g35810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAAAGAAGAGTGCATGGAAGCTCTTTCCAAACATGCAAATATCAAGCCTGTTATTACCTCCACCGTTTGGAAGGAGTTAGAGAAGGAGAACAAGGAGTTCTTCGAGGCATACACGAGGAGCAGAGCAGAGAGAGCTTCGGAGAGAGAGACAAGGCAAAGGATCCAGAGCGTGGTTTCAGATTCTTCCAAAGAACGAATTTAG

Predicted protein sequences of Glyma19g35810

Limit To All Plant Sequences

>Glyma19g35810.1   sequence type=predicted peptide   gene model=Glyma19g35810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDSSSSAAYIRLVHRLIEECILFNMSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYTRSRAERASERETRQRIQSVVSDSSKERI*

>Glyma19g35810.2   sequence type=predicted peptide   gene model=Glyma19g35810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSKEECMEALSKHANIKPVITSTVWKELEKENKEFFEAYTRSRAERASERETRQRIQSVVSDSSKERI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain