Glyma19g35710 - SoyBase

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Report for Sequence Feature Glyma19g35710

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43192779
stop:	43196858
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35710

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G53620	AT	Annotation by Michelle Graham. TAIR10: pyrophosphorylase 4 \| chr3:19881491-19883308 FORWARD LENGTH=216	SoyBase	E_val: 3.00E-135	ISS
GO:0006796	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate-containing compound metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000287	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding	SoyBase	N/A	ISS
GO:0004427	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inorganic diphosphatase activity	SoyBase	N/A	ISS
KOG1626	KOG	Inorganic pyrophosphatase/Nucleosome remodeling factor, subunit NURF38	JGI		ISS
PTHR10286	Panther	INORGANIC PYROPHOSPHATASE	JGI		ISS
PF00719	PFAM	Inorganic pyrophosphatase	JGI		ISS
UniRef100_B9SZB4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Inorganic pyrophosphatase, putative n=1 Tax=Ricinus communis RepID=B9SZB4_RICCO	SoyBase	E_val: 2.00E-141	ISS
UniRef100_C6SZP0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SZP0_SOYBN	SoyBase	E_val: 4.00E-160	ISS

Expression Patterns of Glyma19g35710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g35710 not represented in the dataset	Glyma19g35710 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35710

Paralog	Evidence	Comments
Glyma03g33000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35710 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g173600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35710

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g35710

Limit To All Plant Sequences

>Glyma19g35710.2   sequence type=transcript   gene model=Glyma19g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGAATTTTCTTACTACTTGAGTTTCCTTTTTCTTATTGCTTTGCACTTTTATTTGTGCTCGTCTTCTTCTCCTTTCCTTACCACAGAAGAATAGTAGCAATCAGAGACTGAAGACGAGCTTCCCCTTGCGCCGAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAATAGTGTTTCCATTTCTCATCATTCCTCACACCCTCCCCTTAATGAGAGGATTATTTCATCCATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGGACCTGGTGCTCCAATTATCTTCAATTGTGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATAGACATTACAATGATATCAAAGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTTGAAGCGGTTAAGCGATCCATGTAAGTCCTCTGACTCGCAAACACTTTACTGTTTTACCTAGTCATGAGTCTCATGACTAATCTGGAAACTGAATTGGTTCAAAAGTTTCTGATTGATCTATTTAGTTCCCCCAGTTCACACCATTTCTAATTTTCTATGAAATAGTTTTTTAAATTAGTAGAAACTCTTTCTCTTTTCAAATTCCCCGGCATTTTAGTTATAATATTTTGTTATTTTACATGCATAGATTATCAGATCACAATATCAATCTCTTAAAGTAACATTTTTCTATATTGAGAAGGAGCTTGTATGCGGATTACATAGTGGAGAGCTTGAGGCGGTAGCCGATGAATGATGCACGTCAAGGATTTTTAACTGACGGACCAATGGAAGATATTTGCATGAAAAAAGGCTGCATTATCAATATTATGTAGGGATAAAAAAAAAACATTTTACTTTAGCTGCCTCTTAGCACATGCGTGTTCTACAGACTACACGTGCTTAATTTCAAATATTTCATCTCTGCACTTTAGCCACATGTTTTATCCCTGTATAATTTTATATTCATTAGAAAGGGTAGAAAGGGTGTAATATTTTTTTTTGTTTTTTACAAGTAGGTTAAAATTATTTTCTCATTTTATGTCTTTATTAAATTAAAATATGACATGGAGTAAAAAGTACAAAAAATTATTTTTTTCCTAATTTGCTATATTTATAAATTCATGTTAAATGAATTTTCATATAAGTGTAACATATTAACATATAATAAACACATTATAATAATTTAAAGTATTTTTTTTTAACATGAAACAAACAACAACTCATTAT

>Glyma19g35710.3   sequence type=transcript   gene model=Glyma19g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGAATTTTCTTACTACTTGAGTTTCCTTTTTCTTATTGCTTTGCACTTTTATTTGTGCTCGTCTTCTTCTCCTTTCCTTACCACAGAAGAATAGTAGCAATCAGAGACTGAAGACGAGCTTCCCCTTGCGCCGAAGGGCCACCGATGGTTGAAACCGAGATGGATGCAGAAACTGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAATAGTGTTTCCATTTCTCATCATTCCTCACACCCTCCCCTTAATGAGAGGATTATTTCATCCATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGGACCTGGTGCTCCAATTATCTTCAATTGTGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATAGACATTACAATGATATCAAAGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTGTATCCTTCCAAGAATTCTAATTCCAATGTTTGATTTTCAAATTTTCTACTTGTTAACGTCTACAGGCATGTTGAAATCATGAAATACATTGGTCCTTTTCAGTGCAGCATGTGAAATAAATGTTATAGTTTGTTTTCCTTCATAAAGGATTTAGACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTTGAAGCGGTTAAGCGATCCATGAGCTTGTATGCGGATTACATAGTGGAGAGCTTGAGGCGGTAGCCGATGAATGATGCACGTCAAGGATTTTTAACTGACGGACCAATGGAAGATATTTGCATGAAAAAAGGCTGCATTATCAATATTATGTAGGGATAAAAAAAAAACATTTTACTTTAGCTGCCTCTTAGCACATGCGTGTTCTACAGACTACACGTGCTTAATTTCAAATATTTCATCTCTGCACTTTAGCCACATGTTTTATCCCTGTATAATTTTATATTCATTAGAAAGGGTAGAAAGGGTGTAATATTTTTTTTTGTTTTTTACAAGTAGGTTAAAATTATTTTCTCATTTTATGTCTTTATTAAATTAAAATATGACATGGAGTAAAAAGTACAAAAAATTATTTTTTTCC

Coding sequences of Glyma19g35710

Limit To All Plant Sequences

>Glyma19g35710.1   sequence type=CDS   gene model=Glyma19g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAAACCGAGATGGATGCAGAAACTGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAATAGTGTTTCCATTTCTCATCATTCCTCACACCCTCCCCTTAATGAGAGGATTATTTCATCCATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGGACCTGGTGCTCCAATTATCTTCAATTGTGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATAGACATTACAATGATATCAAAGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTTGAAGCGGTTAAGCGATCCATGAGCTTGTATGCGGATTACATAGTGGAGAGCTTGAGGCGGTAG

>Glyma19g35710.2   sequence type=CDS   gene model=Glyma19g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAAACCGAGATGGATGCAGAAACTGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAATAGTGTTTCCATTTCTCATCATTCCTCACACCCTCCCCTTAATGAGAGGATTATTTCATCCATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGGACCTGGTGCTCCAATTATCTTCAATTGTGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATAGACATTACAATGATATCAAAGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTACAAGAAGAATGAAAACAAGGAAGTTGCAGTAAACGACTTTTTGCCTGCCTCAGCTGCTTTTGAAGCGGTTAAGCGATCCATGTAA

>Glyma19g35710.3   sequence type=CDS   gene model=Glyma19g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAAACCGAGATGGATGCAGAAACTGTTGCAAATGTGGTTCCACCAAAGGAGACTCCAAATAGTGTTTCCATTTCTCATCATTCCTCACACCCTCCCCTTAATGAGAGGATTATTTCATCCATGACCAGGAGATCTGTTGCTGCACACCCATGGCATGACCTTGAGATAGGACCTGGTGCTCCAATTATCTTCAATTGTGTGATTGAGATTGGGAAAGGGAGCAAGGTGAAATATGAACTGGACAAAAAGTCGGGGCTTATCAAGATCGACCGCGTGCTTTACTCATCAGTTGTTTATCCTCACAACTATGGGTTTATCCCTCGTACTATTTGTGAGGACAGTGATCCCCTGGATGTCTTGATTATTATGCAGGAGCCGGTTCTTCCAGGTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGGGGGAGAAAGATGATAAAATTATTGCTGTCTGTGCTGATGATCCTGAGTATAGACATTACAATGATATCAAAGAGCTTCCTCCACATCGTTTAGCTGAAATTCGTCGTTTTTTTGAAGACTGTATCCTTCCAAGAATTCTAATTCCAATGTTTGATTTTCAAATTTTCTACTTGTTAACGTCTACAGGCATGTTGAAATCATGA

Predicted protein sequences of Glyma19g35710

Limit To All Plant Sequences

>Glyma19g35710.1   sequence type=predicted peptide   gene model=Glyma19g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVETEMDAETVANVVPPKETPNSVSISHHSSHPPLNERIISSMTRRSVAAHPWHDLEIGPGAPIIFNCVIEIGKGSKVKYELDKKSGLIKIDRVLYSSVVYPHNYGFIPRTICEDSDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASAAFEAVKRSMSLYADYIVESLRR*

>Glyma19g35710.2   sequence type=predicted peptide   gene model=Glyma19g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVETEMDAETVANVVPPKETPNSVSISHHSSHPPLNERIISSMTRRSVAAHPWHDLEIGPGAPIIFNCVIEIGKGSKVKYELDKKSGLIKIDRVLYSSVVYPHNYGFIPRTICEDSDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDYKKNENKEVAVNDFLPASAAFEAVKRSM*

>Glyma19g35710.3   sequence type=predicted peptide   gene model=Glyma19g35710   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVETEMDAETVANVVPPKETPNSVSISHHSSHPPLNERIISSMTRRSVAAHPWHDLEIGPGAPIIFNCVIEIGKGSKVKYELDKKSGLIKIDRVLYSSVVYPHNYGFIPRTICEDSDPLDVLIIMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDIKELPPHRLAEIRRFFEDCILPRILIPMFDFQIFYLLTSTGMLKS*

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