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Report for Sequence Feature Glyma19g35670

Feature Type:gene_model
Chromosome:Gm19
Start:43166744
stop:43169591
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37510AT Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein | chr2:15743112-15744504 REVERSE LENGTH=142 SoyBaseE_val: 7.00E-39ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
PTHR24012Panther FAMILY NOT NAMED JGI ISS
PTHR24012:SF187Panther JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
UniRef100_G7L0L1UniRef Annotation by Michelle Graham. Most informative UniRef hit: RNA binding protein n=1 Tax=Medicago truncatula RepID=G7L0L1_MEDTR SoyBaseE_val: 7.00E-52ISS
UniRef100_I1NA00UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NA00_SOYBN SoyBaseE_val: 2.00E-66ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g35670 not represented in the dataset

Glyma19g35670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g32960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g173200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g35670.2   sequence type=transcript   gene model=Glyma19g35670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATCCTCCAAAACCTCGTCCAAGGTTTGTGTTGTGTTGGGTGAGATTTTATTCTAACATCGTTTCATCAAATGGCTTTTATGTCTGGAGTTCAGCGTCTGCTTCGCCGCACTCCACTTGTTCATTCCCACTATGCTTCTATTCGTCTCAGCTCAACTCTCACTTCCCCCAAACTTTTCGTCTTTGTAGACTGACAACAGATGAAAAACTTAAGGAAGCATTTTCGTCTTTTGGGCAGCTGGTTGAAGCTAAGGTGATAATTGATAGAGCCTCTGGAAGATCAAAGGGGTTTGCTTTTGTAACTTATACAACCATAGAGGAAGCTGAAAAGGCAAGAGAAGGAATGAACGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAGCCAAGAGAGCCCAGACCTCCCCAGCAGTCACAGTCTCAACCCTCTGAAACAGGTTTCACTGTCAACAAAACGGTTGGGTGGTGTGGTTGATCACTAAAGAAACTTCAATTATGCTCACAAGTCACGGTATTTGGATGATTTTTTAAAAACTATAATTCAAATCAGCCAATTATACTGCCATTTGTTGAGAAATATTTGTATCAGTCAGTCAGTCGTGATTGATGATTGAACTGTAGCAATAAGGCATTAAATTATATTTATGCAAATTTTGATGTTTATGGGAAATTAATCGTTCCTTTGCTGACGTGATGTGATATTCATCTAACTTCTTTTCCCTGGTAGTGCATCTGCAGGGAATTTCATTACTAAGTTCTGTAAAAAAAATTGTTACTAATTAATTTTCATTGGTCTGTCACG

>Glyma19g35670.1   sequence type=CDS   gene model=Glyma19g35670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTTATGTCTGGAGTTCAGCGTCTGCTTCGCCGCACTCCACTTGTTCATTCCCACTATGCTTCTATTCGTCTCAGCTCAACTCTCACTTCCCCCAAACTTTTCGTAAGCGGTCTTTGTAGACTGACAACAGATGAAAAACTTAAGGAAGCATTTTCGTCTTTTGGGCAGCTGGTTGAAGCTAAGGTGATAATTGATAGAGCCTCTGGAAGATCAAAGGGGTTTGCTTTTGTAACTTATACAACCATAGAGGAAGCTGAAAAGGCAAGAGAAGGAATGAACGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAGCCAAGAGAGCCCAGACCTCCCCAGCAGTCACAGTCTCAACCCTCTGAAACAGGTTTCACTGTCAACAAAACGGTTGGGTGGTGTGGTTGA

>Glyma19g35670.2   sequence type=CDS   gene model=Glyma19g35670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GATCCTCCAAAACCTCGTCCAAGGTTTGTGTTGTGTTGGGTGAGATTTTATTCTAACATCGTTTCATCAAATGGCTTTTATGTCTGGAGTTCAGCGTCTGCTTCGCCGCACTCCACTTGTTCATTCCCACTATGCTTCTATTCGTCTCAGCTCAACTCTCACTTCCCCCAAACTTTTCGTCTTTGTAGACTGACAACAGATGAAAAACTTAAGGAAGCATTTTCGTCTTTTGGGCAGCTGGTTGAAGCTAAGGTGATAATTGATAGAGCCTCTGGAAGATCAAAGGGGTTTGCTTTTGTAACTTATACAACCATAGAGGAAGCTGAAAAGGCAAGAGAAGGAATGAACGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAGCCAAGAGAGCCCAGACCTCCCCAGCAGTCACAGTCTCAACCCTCTGAAACAGGTTTCACTGTCAACAAAACGGTTGGGTGGTGTGGTTGA

>Glyma19g35670.1   sequence type=predicted peptide   gene model=Glyma19g35670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFMSGVQRLLRRTPLVHSHYASIRLSSTLTSPKLFVSGLCRLTTDEKLKEAFSSFGQLVEAKVIIDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSETGFTVNKTVGWCG*

>Glyma19g35670.2   sequence type=predicted peptide   gene model=Glyma19g35670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
DPPKPRPRFVLCWVRFYSNIVSSNGFYVWSSASASPHSTCSFPLCFYSSQLNSHFPQTFRLCRLTTDEKLKEAFSSFGQLVEAKVIIDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSETGFTVNKTVGWCG*







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