Glyma19g35640 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma19g35640

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43152541
stop:	43153672
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37530	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G07795.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr2:15751060-15751428 FORWARD LENGTH=122	SoyBase	E_val: 2.00E-37	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
UniRef100_I1N9Z7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9Z7_SOYBN	SoyBase	E_val: 1.00E-81	ISS

Expression Patterns of Glyma19g35640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35640

Paralog	Evidence	Comments
Glyma03g32930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g172900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g35640

Limit To All Plant Sequences

>Glyma19g35640.2   sequence type=transcript   gene model=Glyma19g35640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCATGTTTCCACGTGTGTAGTACTCTTCAATTTTTAATGTTTTGCCGAAGTCGCTCTACGGTCTAAGTGTAGACTAAACCGAACCTATAAATCACGGCCTAATGGCTAATTCTATACCTCACAACTTGGTCAGCACCCCCTTCATACGAGTCTCTCAAGTCATGCTCCACTTCAATGCTCAAAAAGTAGTTGTTATGATTAGGTAGTTCCGCACCAATTTCACTTCATTCCTGTCTTGTTTATAAAGGCAATTGCCAACCCAAAACACCAGCGATTTCACCTACCATCCTAGAGCTTCCCACCATGTCTTTTTTCTGGTTCTCTAACTTGGTCCGTATGCACCTCTCATGGCCTGTGCTAACCTATGCTGCCACGTGGATAATTCTGCTAACGTTGACGGTGGCAGTGGCATCTATGTCACCGCAGGTGGCATTTGTCTCCGCCATAACGCCTTCATCTTCGTTCTCTCAGAAGTGCAGCAGTGCGGTAATTGTAGCGGCTTCTGCTTGCGTGGTTCGTGCTGTGGGCTTGTGGGAGCATGACCAAACTTCTTCAAATGCAAATTAACTTGGTTATTGGTAGTTGTCTTGGGGTCAGATTTTCCATACCGCCGGCAAGAGAAATTATTAAATGGTTCAGGATTAGGATTACGTCAATTTTCATGTGACACAAGTTTTTCTTAGTTTCGGACAAAGAATGAATAAAACAAAATTATGTGTCACGTGAAAATTGAGCAGGATCATGGTTGTCCAAGATTATATGATAATTTCTAGTTGGGGAGTGCTTCTGCTAAACACGACCTGACGTGGAGATTAGGCTTCCCCTGTTTGTAAACACAAGGCTAAGAATTTGAGCTAAACTCATTGATTCTATAAACATGGGCTCATTTGTCTTTGTAAATCAACACAAAGACATTGTCAGCTATGCTGTCTTTGTAATAGACTTCAGAATTATTCAATTGCCAGCAATCATGTTGAAATTCCTGTTCCTTGTTCTTTTGTTCTTTTTTTTCTTTCTTTCTTTC

Coding sequences of Glyma19g35640

Limit To All Plant Sequences

>Glyma19g35640.1   sequence type=CDS   gene model=Glyma19g35640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTTTTCTGGTTCTCTAACTTGGTCCGTATGCACCTCTCATGGCCTGTGCTAACCTATGCTGCCACGTGGATAATTCTGCTAACGTTGACGGTGGCAGTGGCATCTATGTCACCGCAGGTGGCATTTGTCTCCGCCATAACGCCTTCATCTTCGTTCTCTCAGAAGTGCAGCAGTGGTGGGTCCATTAGAATGCCCCTGGATGTTCCAGGTGACATCCTGTGTTTTCCTGCTCATATTTTCGTGAGGTCCAAGGTTGATCTAATTGTTCCACCCGTCTTTGCAGCGGTAATTGTAGCGGCTTCTGCTTGCGTGGTTCGTGCTGTGGGCTTGTGGGAGCATGACCAAACTTCTTCAAATGCAAATTAA

>Glyma19g35640.2   sequence type=CDS   gene model=Glyma19g35640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTTTTTCTGGTTCTCTAACTTGGTCCGTATGCACCTCTCATGGCCTGTGCTAACCTATGCTGCCACGTGGATAATTCTGCTAACGTTGACGGTGGCAGTGGCATCTATGTCACCGCAGGTGGCATTTGTCTCCGCCATAACGCCTTCATCTTCGTTCTCTCAGAAGTGCAGCAGTGCGGTAATTGTAGCGGCTTCTGCTTGCGTGGTTCGTGCTGTGGGCTTGTGGGAGCATGACCAAACTTCTTCAAATGCAAATTAA

Predicted protein sequences of Glyma19g35640

Limit To All Plant Sequences

>Glyma19g35640.1   sequence type=predicted peptide   gene model=Glyma19g35640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFFWFSNLVRMHLSWPVLTYAATWIILLTLTVAVASMSPQVAFVSAITPSSSFSQKCSSGGSIRMPLDVPGDILCFPAHIFVRSKVDLIVPPVFAAVIVAASACVVRAVGLWEHDQTSSNAN*

>Glyma19g35640.2   sequence type=predicted peptide   gene model=Glyma19g35640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSFFWFSNLVRMHLSWPVLTYAATWIILLTLTVAVASMSPQVAFVSAITPSSSFSQKCSSAVIVAASACVVRAVGLWEHDQTSSNAN*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain