Glyma19g35620 - SoyBase

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Report for Sequence Feature Glyma19g35620

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43134648
stop:	43138750
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37550	AT	Annotation by Michelle Graham. TAIR10: ARF-GAP domain 7 \| chr2:15755544-15757456 REVERSE LENGTH=456	SoyBase	E_val: 0	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG0704	KOG	ADP-ribosylation factor GTPase activator	JGI		ISS
PTHR23180	Panther	CENTAURIN/ARF	JGI		ISS
PTHR23180:SF80	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01412	PFAM	Putative GTPase activating protein for Arf	JGI		ISS
UniRef100_B9SP31	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arf gtpase-activating protein, putative n=1 Tax=Ricinus communis RepID=B9SP31_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N9Z5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9Z5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g35620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35620

Paralog	Evidence	Comments
Glyma03g32910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g172700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g35620

Limit To All Plant Sequences

>Glyma19g35620.1   sequence type=CDS   gene model=Glyma19g35620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCGTCGCGGCGGCTCCGGGACCTCCAATCCCAACCGGCGAACAAGATCTGCGTCGACTGTTCCCAGAAGAACCCGCAATGGGCCTCGGTTTCCTACGGCGTCTTCATGTGCCTGGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTGCACATCTCCTTCGTGCGATCCGTGACGATGGATTCGTGGTCTGAAATCCAGATCAAGAAGATGGAAGCCGGAGGCAACGACAAACTCAACGCGTTTCTCTTGCAGTACGGCATCCCCAAGGAAACCGATATCGTCGCCAAGTATAACTCCAACGCTGCCTCCGTCTACCGCGACCGCATCCAGGCCCTCGCCGACGGCCGCCCCTGGCGGGATCCCCCCGTCGTCAAGGAAGCCGTCCGTTCCTCCTCCGCTGCATTCAAGGGCAAGCCGCCGCTCTCGGCTAGCAGCAACAACAACGGCGGATGGGATAATTGGGACGCCGACGACGGATTCGGATCGGCCAGGGGCGGGTCGGATCTCAGGCGGAACCAGTCCACCGGGGACGTGAGGGGATTCGGCGGCGGCGGGAACGTGGCGAGGTCAAAATCGACGCAGGATATTTACACGCGGGCTGAATTGGAAGCTTCTGCTGCCAACAAAGAAGAATTCTTCGCGCGGAAGAGAGCGGAGAATGAGTCGCGGCCGGAGGGGCTTCCGCCGTCGCAGGGTGGCAAGTATGTTGGATTCGGATCTGGCCCCGCCCCGCCCCAGAGGGGTAATCAGCAAAACGATTATTTCTCTGTCGTTTCTCAGGGACTTGGTAAATTATCCTTGGCTGCTGCTTCTGCTGCTAATGTTGTTCAGGCCGGGACAAAAGAGTTATCCGCTAAGGTAAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACAACAGAGATTGGACAAAGGACATGGGGTATGATGAAAGGGGTCATGGCATTGGCTTCACAGAAGGTTGAGGAATTCGCTAGAGATAACCCGAATTGGACGTCTGATAACTGGCAACGAAATGAAAGTGATAGAAATGGTTTCTACCAGGAGTTCAATCGAGAGAATAATGGCCGGAATTCTTCTACCAGAGAAGGACAACATTCTTCAGGTGGACAAACTAATACTTTTCACTCAAGCTCTTGGGATGATTGGGGCCACAATGATTTTAGGAAGGAAGAGCCAGCTAAAGGATCAGCTCCTCAGTCATCAGGTGGGAAGTTTGATAATTATAACTCGAGCTCCTGGGATGATTGGGACCAGGAAGATACAAGGAAGAAAGAACCAGCTAAAGGGTCATCTGCCCGTAGCAGTGATGGTTGGGCTGGATGGGATAATGCCAAAGATGATGGATTTGATGATATCTATGGAAGTGCATCTAATAGTAAAGGTGTCACTCATAATGACAAGTCAGGTGCTGCCTGGACAGGAGGAGGCTTTCTCTAA

Predicted protein sequences of Glyma19g35620

Limit To All Plant Sequences

>Glyma19g35620.1   sequence type=predicted peptide   gene model=Glyma19g35620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASRRLRDLQSQPANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFLLQYGIPKETDIVAKYNSNAASVYRDRIQALADGRPWRDPPVVKEAVRSSSAAFKGKPPLSASSNNNGGWDNWDADDGFGSARGGSDLRRNQSTGDVRGFGGGGNVARSKSTQDIYTRAELEASAANKEEFFARKRAENESRPEGLPPSQGGKYVGFGSGPAPPQRGNQQNDYFSVVSQGLGKLSLAAASAANVVQAGTKELSAKVKEGGYDYKVNETVNVVSQKTTEIGQRTWGMMKGVMALASQKVEEFARDNPNWTSDNWQRNESDRNGFYQEFNRENNGRNSSTREGQHSSGGQTNTFHSSSWDDWGHNDFRKEEPAKGSAPQSSGGKFDNYNSSSWDDWDQEDTRKKEPAKGSSARSSDGWAGWDNAKDDGFDDIYGSASNSKGVTHNDKSGAAWTGGGFL*

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