SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G02500 | AT | Annotation by Michelle Graham. TAIR10: heat shock cognate protein 70-1 | chr5:554055-556334 REVERSE LENGTH=651 | SoyBase | E_val: 0 | ISS |
| GO:0006094 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gluconeogenesis | SoyBase | N/A | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0006457 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein folding | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009615 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to virus | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0010187 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0090332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal closure | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0048046 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: apoplast | SoyBase | N/A | ISS |
| GO:0002020 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protease binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| KOG0100 | KOG | Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily | JGI | ISS | |
| PTHR19375 | Panther | HEAT SHOCK PROTEIN 70KDA | JGI | ISS | |
| PF00012 | PFAM | Hsp70 protein | JGI | ISS | |
| UniRef100_D2D321 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein 70 n=1 Tax=Gossypium hirsutum RepID=D2D321_GOSHI | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000189D2B3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000189D2B3 related cluster n=1 Tax=unknown RepID=UPI000189D2B3 | SoyBase | E_val: 0 | ISS |
|
Glyma19g35560 not represented in the dataset |
Glyma19g35560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g32850 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g172200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g35560.1 sequence type=CDS gene model=Glyma19g35560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGGAAAAGGAGAGGGTCCTGCTATCGGAATCGATCTCGGAACCACCTACTCTTGTGTCGGTGTGTGGCAACATGACCGAGTTGAAATCATCGCCAACGACCAAGGGAACAGAACGACGCCGTCTTACGTCGGCTTCACTGATACCGAGCGTCTCATCGGTGATGCGGCTAAGAACCAAGTCGCCATGAACCCCATCAACACCGTCTTCGATGCCAAGAGGTTGATTGGTCGTAGATTCAGTGACTCCTCTGTTCAGAGTGATATCAAATTGTGGCCTTTTAAGGTCATTGCTGGTGCTGCTGACAAGCCAATGATCGTGGTTAACTACAAGGGTGAAGAGAAGCAATTTGCTGCAGAAGAAATCTCTTCTATGGTGCTCATCAAGATGCGTGAGATTGCTGAGGCTTACCTTGGCTCCACGGTGAAGAATGCTGTTGTCACTGTCCCTGCTTACTTCAATGATTCTCAGCGTCAAGCTACCAAGGATGCTGGAGTCATTGCTGGTCTTAATGTGATGCGAATTATCAATGAGCCTACTGCAGCTGCCATTGCTTATGGTCTTGATAAGAAGGCCACAAGTGTTGGTGAGAAGAATGTGTTGATTTTTGACCTTGGTGGTGGGACATTTGATGTTTCTTTACTAACCATTGAGGAGGGTATCTTTGAGGTGAAAGCCACAGCTGGTGACACCCATCTTGGAGGTGAGGATTTTGATAACAGAATGGTGAACCACTTTGTTCAAGAGTTTAAGAGAAAGAACAAGAAGGACATAAGTGGGAACCCCAGAGCACTTAGAAGGTTGAGGACTGCTTGTGAGAGGGCCAAGAGAACATTGTCATCCACTGCCCAGACCACCATTGAAATTGATTCTCTCTATGAGGGAATTGATTTCTACTCCACTGTTACTCGTGCCAGATTCGAGGAACTGAACATGGATCTCTTTAGGAAGTGTATGGAGCCGGTGGAGAAATGTTTGAGGGATGCTAAAATGGACAAAAGAAGTGTTGATGATGTTGTCCTTGTTGGTGGTTCTACCAGAATTCCCAAGGTTCAACAACTGCTGCAGGACTTCTTTAATGGAAAGGAGCTGTGCAAGAGCATCAATCCTGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCTGCAATTTTAAGTGGTGAGGGCAATGAGAAGGTTCAGGATCTTCTCCTCCTTGATGTCACCCCTCTATCTCTTGGTTTGGAGACTGCTGGCGGTGTGATGACTGTCTTGATCCCTAGGAACACTACAATTCCAACCAAGAAGGAACAGGTTTTCTCAACATACTCTGACAACCAGCCTGGTGTGTTGATCCAGGTCTTTGAAGGTGAAAGAGCAAGGACTAAAGATAACAATTTGTTGGGCAAATTTGAACTTTCTGGCATTCCTCCTGCCCCCAGGGGTGTTCCTCAGATTACTGTGTGCTTTGACATTGATGCCAATGGTATTTTGAACGTCTCTGCCGAAGATAAGACCACTGGCCAGAAAAATAAGATCACTATCACCAATGACAAGGGTAGACTGTCAAAGGAAGATATCGAGAAGATGGTTCAAGAGGCTGAGAAGTACAAATCTGAGGATGAAGAGCACAAAAAGAAGGTTGAGGCCAAGAATGCTTTGGAAAACTATGCATACAACATGAGGAACACTGTGAAGGATGACAAAATTGGTGAGAAACTTGATCCTACTGACAAGAAGAAGATTGAGGACGCAATTGAGCAAGCTATCCAGTGGCTAGACAGCAACCAGCTCGCAGAAGCAGATGAATTTGAGGACAAAATGAAGGAATTGGAAAGCATCTGCAATCCTATCATTGCCAAGATGTACCAAGGTGGTGCTGGTCCTGACATGGGTGGTGCTGGTGCTGGGGCAGCCGAGGATGATTATGCTGCTCCTTCTGGTGGAAGTGGTGCTGGCCCCAAGATTGAGGAAGTGGACTAA
>Glyma19g35560.1 sequence type=predicted peptide gene model=Glyma19g35560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDSSVQSDIKLWPFKVIAGAADKPMIVVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTVTRARFEELNMDLFRKCMEPVEKCLRDAKMDKRSVDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTVKDDKIGEKLDPTDKKKIEDAIEQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGGAGPDMGGAGAGAAEDDYAAPSGGSGAGPKIEEVD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
