SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G51160 | AT | Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein | chr5:20792280-20793681 FORWARD LENGTH=442 | SoyBase | E_val: 5.00E-19 | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0010043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to zinc ion | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0005575 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cellular component | SoyBase | N/A | ISS |
| PF00023 | PFAM | Ankyrin repeat | JGI | ISS | |
| UniRef100_A2Q5K6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin n=1 Tax=Medicago truncatula RepID=A2Q5K6_MEDTR | SoyBase | E_val: 6.00E-40 | ISS |
| UniRef100_UPI0002336E7E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002336E7E related cluster n=1 Tax=unknown RepID=UPI0002336E7E | SoyBase | E_val: 1.00E-83 | ISS |
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Glyma19g35501 not represented in the dataset |
Glyma19g35501 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g171600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g35501.1 sequence type=CDS gene model=Glyma19g35501 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGTTTGGTTCGTGACAAAGATGAGATGCTTCCTCTCCACTTTGCTGCAATGAGAGGGCGCGTGGAAGTCATCAGGGAGTTGATCAAAGCCAAACCAAACTCTATTCGGGAGATGACCGAAACTGATGATGGTTCTGTTCTTCACTTGTCCATTCGCTATAACCATCTCGAGGCTCTGAAATTGCGAGTGGAATCACTGAGAGATGACCATCATTTCCTATCACTCAAAGACAAAGAGGATAACTCTCTTCTGCATTTAGCAGTGAAACGCAGACAAATCAAGATCATTAAATACTTGCTTTCCCTATCCGAAATGAGTATGGAAATAAATGCTTTGAATAGGGAGGGTTTAAAAGCTATGGACATGTTGGAGCGCTATCAAACAGATTTTGTGAGCCAACACACTTTTATTGAAGGAGTTGAAAAGCCTGCAAATGAAGGTATAGCACAAGTAGTTTCCTCAGCAACCCTAATCAGCAATAAGGAAAAAACGGCTTTGCCAACATATAGACGACAACAAAATTCCTCACAAGCACAAAGCATAACTATTGAACTTGTACAACTAGATCCTCCTCCACAACCCTCACCTCAACAAACATCATCATCCTCACAAACCAACATTAATAATATTCCTGAACCACCACAGCCCTCACCAAGCAATGGTCCTCATCAGCTCCAACATGTGACTTCACAAAACATCACAAGTGAACAAGGACAAGATAAATGGAACAGGTTTGAGAGGTTCTGCAAACGTAATCCATCAAGAAGCAGTTTGTGCAGTTTCTCAATCTCCAATTGTCCTTCATAA
>Glyma19g35501.1 sequence type=predicted peptide gene model=Glyma19g35501 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCLVRDKDEMLPLHFAAMRGRVEVIRELIKAKPNSIREMTETDDGSVLHLSIRYNHLEALKLRVESLRDDHHFLSLKDKEDNSLLHLAVKRRQIKIIKYLLSLSEMSMEINALNREGLKAMDMLERYQTDFVSQHTFIEGVEKPANEGIAQVVSSATLISNKEKTALPTYRRQQNSSQAQSITIELVQLDPPPQPSPQQTSSSSQTNINNIPEPPQPSPSNGPHQLQHVTSQNITSEQGQDKWNRFERFCKRNPSRSSLCSFSISNCPS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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