Glyma19g35450 - SoyBase

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Report for Sequence Feature Glyma19g35450

Feature Type:	gene_model
Chromosome:	Gm19
Start:	43028905
stop:	43036194
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20210	AT	Annotation by Michelle Graham. TAIR10: RNI-like superfamily protein \| chr2:8721606-8725042 REVERSE LENGTH=604	SoyBase	E_val: 8.00E-164	ISS
GO:0016114	GO-bp	Annotation by Michelle Graham. GO Biological Process: terpenoid biosynthetic process	SoyBase	N/A	ISS
UniRef100_B9S586	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S586_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F451	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F451 related cluster n=1 Tax=unknown RepID=UPI000233F451	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g35450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35450

Paralog	Evidence	Comments
Glyma03g32700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g171100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g35450

Limit To All Plant Sequences

>Glyma19g35450.1   sequence type=CDS   gene model=Glyma19g35450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGGCTCCTCCGTCTCTAATATCTCTGTGCATCGACGCTCTCGCACAACAATTTCTCCGTCCAAGCGATGATCTTCCTTCTATCTACGACCTTCCTTCTCACTTACTCCACACCTTAATCACGCGTTTGCCCCCTTTCGCACTCCGCACATTCCACCGCCACCACCTACCATTCGACGAGGAAGGGTTTTCTCGCGACGACTCCACGAAGAAGAGAAAACGCGCAAGGGATTGGAATTTAAGTTCAGCTTGGCAGAGGTTGTTTCTGCTACGCTGGCCTGATCGCGTTAAGCAGATTCAGCCAACGGATTGGGAGCAACACTATTGGGAAATTCATTTGCAAGATTGTTTAGATGAAGCGGCTGAGGTAGCACTAATTCCATCGTTTAGTGGATATATTGGTGACATACAGATTTCAGACAGCATACTGAAATATATTGGCTTTGTGGGGAATACAAGCCATTCAAGTTGTGACCATTCAAAATTGTCTTACCATTGCCTACAATTTGGCAGCCATGTGAGTTGTCTGATGCTGCAAAATGTTCTATGTACTGCAGAAACTAGTGTTTTGTTGAGGGAATGCAAGCTACAGAGTCTGGTACTAAGATGTATCCGATCCAAGGAACAAATTGATGGATTATGCAAACTTCTTGCTCAACATTGTAGAATGTTAACGTCTCTGGAATTTGTTCACTGCACACTCTCAACAGATTTTATTAATGCAATATTTGGTTCTTTAGTCATAGAGAGAGTACAAAAACATGGGATCCAACATTTGTCAATCATCGCCACAAGTTTTCTTGAACCATGTGCAGTTTCTTTACCTAGTGGACTCATGTCATTTTTGTCTTCGGGAAGGTCCTTGTGCTCATTAAAATTATCTGACAACCAACATGGACGGACTTTTGCCAAAGATCTTTTTGTGACTCTTCTCAATCTTTCATCTGGCATATCTGTCCTTGATCTTTCTGAGAATAGAATAGCAGGATGGCTTTCTGACTTTAACAGAAGATTTTTGAGTGGTTCACATATGTCTTTTGGAAATGGAAAGTCCTTGAAACTGTTGCGTGTACTCAATCTGAGGGAAAACAATTTAGGAAAAGATGATGTAGAAAGTCTTAGATATGCTCTTCAACATGTGCCTAACTTGGAGGAGCTGGACATCAGTGGCAATTCAATTGAAGATGAAGGAATCAGGAATTTAATTCCCTATTTTGTTGGAGCATCTGAAACGTGTCCTCACATAACTTGTTTGAAATTAGAGAACTGTGATCTGTCCTGTGTTGGAGTGAATAATCTCCTACATATCCTTTCTAATTTCAAAGGACCATTAAAGTCTCTTTCTATTGCTGACAATTACCTTGGCAGTCAAGTAGCTGAAGCATTGGGAAAATTTTTTAGCACCCCAATCGAAGTACTTGACATTGCAGGCATTGGATTGGGTTCTTACGGTTTTCAAGAGCTTCAAAGTCTAATAAAAGAGAAGGTTAAGCTGGTGAAAATTAATATAAGCAAAAATCGTGGTGGGATTGCAACTGCCAAATTTTTGTCTAAACTCTTGTCCCAGGCTCCACAACTAGTTGATGTGAATGCAGCCAGTAATCTTATGCCAATAGAATCACTGGCCATCATCTGCTCCGCGTTAAAGTTTGCAAAAGGTAATGTTCAGCAAGTGGACTTGACAGGACATATATGGGACTATAAGCCAGAGCATGTTTCCCCTTACACTGAATTTGTACATAATGGATTACCTATATTGATTCTTCCATCATCATCAGCCTCTGCTGCACCTCACGACCATGATCCTTAG

Predicted protein sequences of Glyma19g35450

Limit To All Plant Sequences

>Glyma19g35450.1   sequence type=predicted peptide   gene model=Glyma19g35450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEAPPSLISLCIDALAQQFLRPSDDLPSIYDLPSHLLHTLITRLPPFALRTFHRHHLPFDEEGFSRDDSTKKRKRARDWNLSSAWQRLFLLRWPDRVKQIQPTDWEQHYWEIHLQDCLDEAAEVALIPSFSGYIGDIQISDSILKYIGFVGNTSHSSCDHSKLSYHCLQFGSHVSCLMLQNVLCTAETSVLLRECKLQSLVLRCIRSKEQIDGLCKLLAQHCRMLTSLEFVHCTLSTDFINAIFGSLVIERVQKHGIQHLSIIATSFLEPCAVSLPSGLMSFLSSGRSLCSLKLSDNQHGRTFAKDLFVTLLNLSSGISVLDLSENRIAGWLSDFNRRFLSGSHMSFGNGKSLKLLRVLNLRENNLGKDDVESLRYALQHVPNLEELDISGNSIEDEGIRNLIPYFVGASETCPHITCLKLENCDLSCVGVNNLLHILSNFKGPLKSLSIADNYLGSQVAEALGKFFSTPIEVLDIAGIGLGSYGFQELQSLIKEKVKLVKINISKNRGGIATAKFLSKLLSQAPQLVDVNAASNLMPIESLAIICSALKFAKGNVQQVDLTGHIWDYKPEHVSPYTEFVHNGLPILILPSSSASAAPHDHDP*

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