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Report for Sequence Feature Glyma19g35441

Feature Type:gene_model
Chromosome:Gm19
Start:43025663
stop:43027220
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g35441
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G28780AT Annotation by Michelle Graham. TAIR10: GDSL-like Lipase/Acylhydrolase superfamily protein | chr4:14215603-14217159 FORWARD LENGTH=367 SoyBaseE_val: 2.00E-74ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0010103GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis SoyBaseN/AISS
GO:0016556GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA modification SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0016788GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds SoyBaseN/AISS
PTHR22835Panther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN JGI ISS
PTHR22835:SF39Panther LATERAL SIGNALING TARGET PROTEIN 2 JGI ISS
PF00657PFAM GDSL-like Lipase/Acylhydrolase JGI ISS
UniRef100_H6UJ32UniRef Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein n=1 Tax=Cajanus cajan RepID=H6UJ32_CAJCA SoyBaseE_val: 4.00E-88ISS
UniRef100_UPI000233F450UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F450 related cluster n=1 Tax=unknown RepID=UPI000233F450 SoyBaseE_val: 3.00E-118ISS

Expression Patterns of Glyma19g35441
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g35441 not represented in the dataset
Glyma19g35441 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35441
ParalogEvidenceComments
Glyma03g32690 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35441 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g171000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g35441
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g35441
>Glyma19g35441.1   sequence type=CDS   gene model=Glyma19g35441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGAATGTATTACTGAATAATAAGCGGATTCCTTTTTTGTCCATCACCATTAAAATGTTTGAGCAGTACCAGGAACGGTTAAGTGCAGTTGTAGGGGCTAAACGGGCGAAGAAGGTTGTGAATGAAGCTCTGGTGCTAATGACTTTGGGTGGTAACGACTTTGTTAACAACTATTTCTTGGCTGGCTCCTATTACTCCGAGAGGTTGTATGAGTTGGGGGCTCGACGGGTGCTGGTGACAGGAACTGGTCCATTAGGGTGTGTTCCTTCCCAGCTTGCTATGAGGAGCACAAATGGGGAGTGTGTACCCGTGTTACAACAAGCCACACAAATTTTCAACCCTTTGCTCGATAACATGACCAAAGATCTAAACTCCCAACTTGGTTTTGTTACATCTAAGATGGCATGTTGTGGACAAGGCCCATACAATGGGCTGGGCCCGTGTAACCCTTTGTCGAGTCTGTGCTCAAACCGGGATGCTTATGCATTTTGGGATGCTTTCCATCCAAGCCAACGTGCGCTTGATTTCATTGTGGATGGGATCTTCAAGGGAACCAGCAACCTTATGAGCCCTATGAACCTCAGCACCATAATGGCCATGGACTCCAACATCTAA
Predicted protein sequences of Glyma19g35441
>Glyma19g35441.1   sequence type=predicted peptide   gene model=Glyma19g35441   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQNVLLNNKRIPFLSITIKMFEQYQERLSAVVGAKRAKKVVNEALVLMTLGGNDFVNNYFLAGSYYSERLYELGARRVLVTGTGPLGCVPSQLAMRSTNGECVPVLQQATQIFNPLLDNMTKDLNSQLGFVTSKMACCGQGPYNGLGPCNPLSSLCSNRDAYAFWDAFHPSQRALDFIVDGIFKGTSNLMSPMNLSTIMAMDSNI*






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