SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G43900 | AT | Annotation by Michelle Graham. TAIR10: myosin 2 | chr5:17657241-17667413 REVERSE LENGTH=1565 | SoyBase | E_val: 0 | ISS |
| GO:0000902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell morphogenesis | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0030048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament-based movement | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0048467 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gynoecium development | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0051645 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi localization | SoyBase | N/A | ISS |
| GO:0051646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitochondrion localization | SoyBase | N/A | ISS |
| GO:0060151 | GO-bp | Annotation by Michelle Graham. GO Biological Process: peroxisome localization | SoyBase | N/A | ISS |
| GO:0090436 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf pavement cell development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005777 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: peroxisome | SoyBase | N/A | ISS |
| GO:0016459 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: myosin complex | SoyBase | N/A | ISS |
| GO:0003774 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: motor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0017137 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Rab GTPase binding | SoyBase | N/A | ISS |
| GO:0030742 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP-dependent protein binding | SoyBase | N/A | ISS |
| KOG0160 | KOG | Myosin class V heavy chain | JGI | ISS | |
| PTHR13140 | Panther | MYOSIN | JGI | ISS | |
| PF00063 | PFAM | Myosin head (motor domain) | JGI | ISS | |
| PF00612 | PFAM | IQ calmodulin-binding motif | JGI | ISS | |
| PF01843 | PFAM | DIL domain | JGI | ISS | |
| PF02736 | PFAM | Myosin N-terminal SH3-like domain | JGI | ISS | |
| UniRef100_G7KZI6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Myosin XI-2 n=1 Tax=Medicago truncatula RepID=G7KZI6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N9X9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9X9_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma19g35410 not represented in the dataset |
Glyma19g35410 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g32660 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g170700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g35410.1 sequence type=CDS gene model=Glyma19g35410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCGGCTGCCAATCCTGTAGTTGGGTCCCATATTTGGGTGGAGGATCCTGATGTGGCTTGGATAGATGGTGAGGTCTTGGAGGTTAAAGGAGAAGAAATTAAAGTCCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAAGCTTCCAGTATTTATCATAAAGATACAGAAGTCCCACCAAGTGGAGTGGATGATATGAGAAAGCTTGCATACCTGCATGAACCTGGAGTCCTAGATAATCTGAGATCAAGATATGATATAAACGAAATTTATACTTACACCGGGAATATATTGATTGCTGTGAACCCTTTCATAAAGCTTCCTCATTTATATGATAGCCATATGATGGCCCAATATAAAGGAGCAGCTTTTGGTGAGCTAAGTCCACATCCCTTTGCTGTTGCAGATGCAGCATATAGGCTTATGATAAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGAGCTGGTAAAACAGAAAGTACCAAGTTGCTCATGAGGTATCTTGCTTACATGGGTGGGAGAGCTGCTGCTGCTGAAGGTAGAACTGTTGAGCAAAAGGTTCTGGAGTCCAATCCTGTTCTAGAAGCCTTTGGCAATGCAAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGACCAGAGTGGAAGAATATCAGGAGCTGCTATCAGGACTTATCTGCTTGAAAGATCACGTGTTTGCCAGGTGTCAGATCCAGAGAGGAACTATCATTGTTTCTACATGCTCTGTGCTGCACCTCCGGAGGATGTTAAAAAGTACAAATTAGGAGATCCAAGAATGTTTCATTATCTGAATCAATCAAATTGCTTTGAGTTGGAAGGGGTTGATGAATCTAAAGAATATAGGGATACAAGGAGAGCAATGGATATTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATATTTAAAGTTGTTGCTGCAATTTTGCATCTTGGCAACATTGAATTTGCGAAAGGGAAGGAGATAGACTCATCTATGCCCAAAGATGAAAAATCTCGGTTCCATCTACAGACTGCTGCTGAGCTTTTCATGTGTGATGCAAAGGCACTTGAAGATTCTCTTTGCAAACGTGTAATTGTTACTCGTGATGAAACAATTACAAAATGGCTGGATCCGGAAGCTGCTGCACTCAGCCGAGATGCCTTGGCTAAGATTGTGTACACAAGATTGTTTGACTGGTTGGTTGATAAAATTAATAATTCTATTGGTCAAGACCCCGAGTCAAAATCCTTAATTGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGTATTAATTTGACCAATGAAAAGCTTCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAGGAAATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTGGATCTCATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTGGATGAAGCTTGTATGTTTCCTAGATCTACACACGAAACTTTTGCCCAAAAGCTATATCAGACCTTCAAAAATCACAAAAGGTTTAGCAAGCCTAAATTATCACGTAGTGACTTCACAATTTGCCATTATGCAGGAGATGTAACTTATCAAACTGAATTGTTCCTCGACAAGAACAAGGATTATGTTGTTGCAGAGCACCAAGCACTTCTTTATGCTTCCAAATGCCCCTTTGTATCGGGCTTGTTTCCCCCTTCACCCGAAGAATCTTCTAAACAATCAAAGTTCTCTTCAATTGGTTCACGATTTAAGCAACAATTGCAATCTTTACTTGAAACTCTCAGTGCCACTGAGCCACACTACATTCGTTGTGTAAAACCCAATAATCTTCTTAAGCCAGCAATTTTTGAGAATAAAAATGTTCTGCTGCAACTACGTTGTGGGGGAGTTATGGAAGCAATTAGGATAAGCTGTGCTGGGTATCCTACTAGAAAAACCTTTGATGAATTTGTGGATCGATTTAGCCTTCTTGCACCTGAAGCATTGGCTGGAAGTTCTGATGAGGTCACTGCTTGCAAGAGGATTCTAAAGAATGTTGGACTTGAAGGCTATCAGATTGGTAAGACAAAGGTGTTTCTTCGAGCTGGTCAGATGGCAGAACTAGATACCCGCAGAACTGAAATCTTGGGGAGGTCAGCAAGCATTATTCAGAGAAAAGTTCGTTCCTATTTGGCCTGCCAAAGTTTCATCTTGCTTCGTTTGTCTGCTGTGCAGATTCAAGCTGCGTGCAGAGGACAACTTGCACGGCAAGTGTATGAGGGAATGCGGCAGGAGGCTTCTAGTTTAGTGATTCAGAGGTGCTTCCGCATGCATATTGCTTGGAAGGCATACAAAGATCTGTATACCTCTGCTATCTCTATCCAGACTGGTATGCGGGGGATGGCTGCTCATTGTGAGCTACACTTCAGAAGGCAAACTAAAGCAGCAATTGCCATTCAGAGCCACTGCCGGAAATACTTGGCACAACTTCATTTCGCAAAATTAAAGAAGGCAGCAATTACAACGCAATGTGCATGCAGAGGAAAAGTTGCTCGGCGAGAATTGCGAAAGCTCAAGATGGCTGCAAGAGAAACAGGAGCTCTCCAAGCTGCCAAAAGTAAGCTTGAAGAGCAAGTTGAAGACCTTACATTAAGATTGCAGCTGGAAAAACGTTTGCGGGTTGACATCGAAGAAGCAAAAGCACAAGAAAATCAAAGATTACAATCTGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAAACTAAGCTACTTCTTGAAAAGGAGAGGGAGGCTACAAAAAAAGCAGCTGAGAGAGCGGCTGTCATACAGGAAGTTCCAGTTGTTGACAATGCTTTGTTGGAGAAGCTCAGAAGTGAGAATGAGAAACTCAAGAACATGGTGAGTTCGCTGGAAAAGAAAATTGATGAAACGGAAAAAAGGTATGAAGAGGCAAACAAAATTGGTGAAGAAAGGTTGAAGCAAGCTTTGGATGCAGAGTCAAAAGTAATCCATTTGAAGACTGCTATGCAAAGGCTTGAAGAGAAATTCATAGACATGGAATCTGCAAACCATATTCTTCAGAAACAATCTCTATTAAACTCATCTGTGAAAACAATAGCAGAGCACCTGTCTTCCCCATTGGACGAGAAGTTAGAAAATGGTCACCATGCGGCAGAAGAGCAGGAAGCTGTTGATACATTTGTTACACCTGTGAAACAATTTGGTACTGAATCAGACAGTAAATTGAGAAGATCTTACAATGAACGACAACATGAGAGTGTTGATTCACTTGTCAACTGTGTTATGAAAAATATTGGATTCAATCATGGAAAACCCATTGCTGCATTCACCATTTACAAATGTCTTCTCCACTGGAAATCATTTGAAGCTGAAAGAACTAGTGTATTTGATCGCCTCATCCAAATGATTGGTTCCGAAATTGAGAATCAAGACGACAATGATCATATGGCCTATTGGCTGTCAAATACTTCTGCGTTATTGTTTTTACTTGAACAAAGCCTGAAATCTGGGAGTTCAGCAAAAGCTACCCCAGCTAGAAAACTGCCTAATCCAACATCTCTTTTTGGAAGAATGACTATGAGTTTTCTTTCATCCCCTTCTTCTGCCAACCTTGCTGCTCCTCCAGCAGATGTTGTACGCAAGGTAGAGGCTAAATACCCTGCTTTGCTTTTCAAGCAGCAGCTCACAGCCTATTTCGAGAAAATATATGGCATCATTCGAGATAATTTGAAGAAGGATTTAACACCGGTTCTTGCATTATGCATCCAGGCACCAAGAATATCAAAGGGAGGGTTACGTTCTAACCGATCCCTTGCTAAGGACTCCCCAGTAGTTCACTGGCAGAGTATTATTGAATCCCTCAATACACTCCTCTGTACACTGAAAGAGAACTTTGTGCCACCAGTTCTTATCCAAAAGATCTTTAGTCAAACATTCTCATATATTAATGTGCAACTCTTCAATAGTCTTCTTCTTCGTCGTGATTGTTGCACATTCAGCAATGGGGAATATGTGAAAGCTGGATTAGCTGAATTAGAGTTGTGGTGCTGCCAAGCAAAGGAAGAGTATGCAGGGTCATCTTGGGATGAGCTTAAGCACATAAGACAGGCTGTTGGATTCTTGGTTATTCATCAGAAGTATAGGATTTCCTATGATGAAATCATCAATGATTTATGCCCCATCTTGAGTGTCCAGCAGCTATATAGAATATGTACACTTTACTGGGATGCTAACTACAATACTCGAAGTGTATCTCCAGATGTCCTTTCAAGCATGAGGATGCTAATGGCTGAGGACTCCAACAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCCAGCATCCCCTTCTCAGTGGATGATCTCTCTACATCACTGCAAGAGAAGGACTTCTCAGACATGAAACCAGCAGACGAGCTTCTCGAGAATCCAGCCTTCCAGTTCTTAAAGGAGTTGGCGCAGGAAGCTTAG
>Glyma19g35410.1 sequence type=predicted peptide gene model=Glyma19g35410 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAAANPVVGSHIWVEDPDVAWIDGEVLEVKGEEIKVLCTSGKTVVVKASSIYHKDTEVPPSGVDDMRKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQSGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGDPRMFHYLNQSNCFELEGVDESKEYRDTRRAMDIVGISSEEQDAIFKVVAAILHLGNIEFAKGKEIDSSMPKDEKSRFHLQTAAELFMCDAKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYTRLFDWLVDKINNSIGQDPESKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLYASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQSLLETLSATEPHYIRCVKPNNLLKPAIFENKNVLLQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFSLLAPEALAGSSDEVTACKRILKNVGLEGYQIGKTKVFLRAGQMAELDTRRTEILGRSASIIQRKVRSYLACQSFILLRLSAVQIQAACRGQLARQVYEGMRQEASSLVIQRCFRMHIAWKAYKDLYTSAISIQTGMRGMAAHCELHFRRQTKAAIAIQSHCRKYLAQLHFAKLKKAAITTQCACRGKVARRELRKLKMAARETGALQAAKSKLEEQVEDLTLRLQLEKRLRVDIEEAKAQENQRLQSALQEMQLQFKETKLLLEKEREATKKAAERAAVIQEVPVVDNALLEKLRSENEKLKNMVSSLEKKIDETEKRYEEANKIGEERLKQALDAESKVIHLKTAMQRLEEKFIDMESANHILQKQSLLNSSVKTIAEHLSSPLDEKLENGHHAAEEQEAVDTFVTPVKQFGTESDSKLRRSYNERQHESVDSLVNCVMKNIGFNHGKPIAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSEIENQDDNDHMAYWLSNTSALLFLLEQSLKSGSSAKATPARKLPNPTSLFGRMTMSFLSSPSSANLAAPPADVVRKVEAKYPALLFKQQLTAYFEKIYGIIRDNLKKDLTPVLALCIQAPRISKGGLRSNRSLAKDSPVVHWQSIIESLNTLLCTLKENFVPPVLIQKIFSQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRICTLYWDANYNTRSVSPDVLSSMRMLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPAFQFLKELAQEA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
