SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G28706 | AT | Annotation by Michelle Graham. TAIR10: pfkB-like carbohydrate kinase family protein | chr4:14167805-14170619 FORWARD LENGTH=403 | SoyBase | E_val: 2.00E-59 | ISS |
| GO:0006014 | GO-bp | Annotation by Michelle Graham. GO Biological Process: D-ribose metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0004747 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribokinase activity | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016773 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor | SoyBase | N/A | ISS |
| PTHR10584 | Panther | SUGAR KINASE RELATED | JGI | ISS | |
| PTHR10584:SF21 | Panther | PFKB CARBOHYDRATE KINASE-RELATED | JGI | ISS | |
| PF00294 | PFAM | pfkB family carbohydrate kinase | JGI | ISS | |
| UniRef100_C6T965 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T965_SOYBN | SoyBase | E_val: 2.00E-83 | ISS |
| UniRef100_G7KZI2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 5-dehydro-2-deoxygluconokinase n=2 Tax=Medicago truncatula RepID=G7KZI2_MEDTR | SoyBase | E_val: 4.00E-83 | ISS |
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Glyma19g35401 not represented in the dataset |
Glyma19g35401 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g32646 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g170600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g35401.1 sequence type=CDS gene model=Glyma19g35401 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCTGCGTGGTTTTCATCCAGCCTTTTTTGGAGCTTACCGCACTGTGCAACTATCTGGAATTGACTACTATGTCTATGTGTGATCTTGAATTTTTAGACAAGCTGTGTAAGTCCGGTACTTGTATACATATCCCAGGATTTCCTCCAATGAAGACAGATGATCTTCCTGAGTCAAGTTTGCTAACTGCATTGAATGGAGCAAGATTTGTCTATTTTGATAGGAGATTGCATGAGACTGCTCTAGTTGTTGCACATGAGGAAGTTAAGGAGAATATACCTATCTTAATGGATGCAGGGAGGCTTAGAGAAGGGTTGGATGATCTCGTGAAATTAGCTGATTATGTGGATCCTTCCACTGAAGAAGTGGATGTTGACAAATTACTGGAATCCCTGCAAACGAGAAAGAACGGAAGCACACACATCCCAACCTGCATATCATCATCAGTGACAAAATTGCATGCAGAAGGTGTAGGAACACTTATTGATACAACTGGTGCTGGAGATGCATTTATTGGAGCCGTTCTCTATGCTATCTGTGCCAAATTTGCACCAGAGAAAATGCTGTGCTTTGCTGCTACTGTGGCAGCTTCCAAGTGCAGAGTTCTTGGAGCAAGAAGCGGTCTTCCTCACCGCACAGATCCATGCTTGGCATCCTTCATGCAATAG
>Glyma19g35401.1 sequence type=predicted peptide gene model=Glyma19g35401 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSCVVFIQPFLELTALCNYLELTTMSMCDLEFLDKLCKSGTCIHIPGFPPMKTDDLPESSLLTALNGARFVYFDRRLHETALVVAHEEVKENIPILMDAGRLREGLDDLVKLADYVDPSTEEVDVDKLLESLQTRKNGSTHIPTCISSSVTKLHAEGVGTLIDTTGAGDAFIGAVLYAICAKFAPEKMLCFAATVAASKCRVLGARSGLPHRTDPCLASFMQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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