Glyma19g35340 - SoyBase

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Report for Sequence Feature Glyma19g35340

Feature Type:	gene_model
Chromosome:	Gm19
Start:	42878781
stop:	42882076
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43940	AT	Annotation by Michelle Graham. TAIR10: GroES-like zinc-binding dehydrogenase family protein \| chr5:17684265-17686379 FORWARD LENGTH=379	SoyBase	E_val: 0	ISS
GO:0006069	GO-bp	Annotation by Michelle Graham. GO Biological Process: ethanol oxidation	SoyBase	N/A	ISS
GO:0006569	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process	SoyBase	N/A	ISS
GO:0008219	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell death	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0010286	GO-bp	Annotation by Michelle Graham. GO Biological Process: heat acclimation	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0046292	GO-bp	Annotation by Michelle Graham. GO Biological Process: formaldehyde metabolic process	SoyBase	N/A	ISS
GO:0048316	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed development	SoyBase	N/A	ISS
GO:0051049	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transport	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005777	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: peroxisome	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0051903	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-(hydroxymethyl)glutathione dehydrogenase activity	SoyBase	N/A	ISS
GO:0080007	GO-mf	Annotation by Michelle Graham. GO Molecular Function: S-nitrosoglutathione reductase activity	SoyBase	N/A	ISS
KOG0022	KOG	Alcohol dehydrogenase, class III	JGI		ISS
PTHR11695	Panther	ALCOHOL DEHYDROGENASE RELATED	JGI		ISS
PTHR11695:SF4	Panther	ARYL-ALCOHOL DEHYDROGENASE	JGI		ISS
PF00107	PFAM	Zinc-binding dehydrogenase	JGI		ISS
PF08240	PFAM	Alcohol dehydrogenase GroES-like domain	JGI		ISS
UniRef100_B9T5W1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T5W1_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N9X0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9X0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g35340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g35340 not represented in the dataset	Glyma19g35340 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35340

Paralog	Evidence	Comments
Glyma03g32590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g170100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g35340

Limit To All Plant Sequences

>Glyma19g35340.1   sequence type=CDS   gene model=Glyma19g35340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACTCAAGGTCAAGTCATTACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTAACTGTCCAAGACGTTCAGGTGGCTCCGCCTCAGGCCGGCGAGGTCCGTGTCCAAATCCTCTTCACCGCTCTCTGCCACACCGATGCTTACACTTGGGGCGGCAAGGATCCCGAAGGTCTCTTCCCCTGTATTCTTGGCCATGAAGCTGCAGGGATTGTGGAGAGTGTTGGAGAAGGTGTTACTAATGTTCAGCCTGGGGATCATGTCATTCCCTGTTATCAGGCTGAGTGTGGGGAGTGCAAGACTTGCAAATCAGGGAAGACAAACCTATGCGGCAAGGTTCGTTCCGCCACTGGAGTTGGGGTCATGCTCAATGATGGGAAGAGTCGGTTCTCGATTAATGGGAAGCCTATTTATCATTTCATGGGAACATCCACTTTTAGTCAATACACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGACCCGAAGGCACCTCTGGAGAAAGTTTGTCTTCTTGGATGTGGTGTTTCAACTGGCCTTGGAGCTGTCTGGAACACTGCAAAAGTGGAGTCAGGGTCCATTGTTGCTATTTTTGGCCTTGGAACTGTTGGGCTTGCTGTTGCAGAGGGTGCTAAAACTGCTGGTGCATCCCGGGTTATTGGCATAGATATTGACAGCAAGAAGTTTGATGTAGCAAAAAACTTTGGAGTCACTGAGTTTATAAATCCAAATGAACATGATAAACCAATCCAGCAGGTCATAATTGATCGCACAGATGGTGGAGTTGATTATAGCTTTGAGTGTATTGGAAATGTCTCCGTGATGAGAGCTGCGTTGGAATGCTGCCACAAGGGCTGGGGGACGTCAGTTATTGTAGGTGTTGCAGCATCAGGGCAGGAAATATCAACCCGTCCTTTCCAGTTGGTGAGTGGACGAGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCAGGTCACAGGTGCCTTGGCTTGTAGACAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACCCATACTTTGACACTTTCGGAGATCAACAAGGCTTTTGATCTTTTGCATGAAGGGGGATGCCTTCGCTGTGTGCTTTCTACACAAGAATGA

Predicted protein sequences of Glyma19g35340

Limit To All Plant Sequences

>Glyma19g35340.1   sequence type=predicted peptide   gene model=Glyma19g35340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATQGQVITCKAAVAWEPNKPLTVQDVQVAPPQAGEVRVQILFTALCHTDAYTWGGKDPEGLFPCILGHEAAGIVESVGEGVTNVQPGDHVIPCYQAECGECKTCKSGKTNLCGKVRSATGVGVMLNDGKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVSTGLGAVWNTAKVESGSIVAIFGLGTVGLAVAEGAKTAGASRVIGIDIDSKKFDVAKNFGVTEFINPNEHDKPIQQVIIDRTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVSGRVWKGTAFGGFKSRSQVPWLVDKYLKKEIKVDEYITHTLTLSEINKAFDLLHEGGCLRCVLSTQE*

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