Glyma19g35330 - SoyBase

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Report for Sequence Feature Glyma19g35330

Feature Type:	gene_model
Chromosome:	Gm19
Start:	42867449
stop:	42877331
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20320	AT	Annotation by Michelle Graham. TAIR10: DENN (AEX-3) domain-containing protein \| chr2:8767082-8772271 FORWARD LENGTH=1029	SoyBase	E_val: 0	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009691	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3569	KOG	RAS signaling inhibitor ST5	JGI		ISS
PTHR15288	Panther	SUPPRESSION OF TUMORIGENICITY 5 (ST5)	JGI		ISS
PF02141	PFAM	DENN (AEX-3) domain	JGI		ISS
PF03456	PFAM	uDENN domain	JGI		ISS
UniRef100_G7KYI3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DENN domain-containing protein 5B n=1 Tax=Medicago truncatula RepID=G7KYI3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F44D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F44D related cluster n=1 Tax=unknown RepID=UPI000233F44D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g35330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35330

Paralog	Evidence	Comments
Glyma03g32581	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g170000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g35330

Limit To All Plant Sequences

>Glyma19g35330.2   sequence type=CDS   gene model=Glyma19g35330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTCAAAAGAAGAGGCTGAACCTCATGAGGATAGGCCCACATCGCCAATGCGGGTCCTGCAGCAATTATCTGAAGGGGCATTCAGAGTTGCTGGGGAAGCATTTCACAATATGTATTCGGGTGGTGGGTCAAGCAAATCACAAATGGGGCCTGGTGCACATAGACGAAGTCAAAGTGAACTTGTTACTAGAGGAGTTGAGCGTACTAATAGCTTTCAGAAATTAAGATCTCATGTGCATAAGGCTTGGCGGTGGGGTGGCAGATTCCGCCAAGAAGTTTCCCCGGCGAGTTTCAACCCGGAGGTCATGGCCAACCAGAAACGGCAGTGGTATCAGCTTCATCCTAGAAGTCTGGGTTGTGTACATTATAAGGAGCCAACATCGCTCTTTGAACATTTTTTGATTGTGGGGCTGCATCCAGATGCTAATTTGGAAGATGTGGAGCATGCATTTGTAAGAAGGAAAAAGTGGGAAAAGGAAAAACCTGAATTTCTAGATTACAAAATGTTACAGCAACAAAGGCCACCAGAACCAACATTGGAACCTCAGTTGCTATTCAAATATCCTCCTGCAAAGAAACTAACAATGCGTATGAAGGATTTAGCTCCCTTTTGCTTTCCTGAAGGTGTTAAGGCATGGCTGTTGGAGAGGACTCCGTCTCTAAGTGAACTAAATGAACTTGTCTATGGACAGGAGCATTTAGGAAAAGATGATCTTTCATTTGTCTTTACAATCAAGGCAGCAGACAATACAACACTTTATGGAGTTTGCTTACATGTGCCTGAAATTGTTCAGAGGCCCCCTGGTATCTTAGGCATATCATCTCCTTTTTCTCATCCCTCTGGGGCATGCAGCCGTTTTCTGGTTTCTGCACCTCGCTGTTACTGTCTTCTGACTAGAGTTCCTTTCTTTGAGTTACACTTTGAGATGTTAAACAGTCTCATTGCACAAGAGCGCCTGAATAGGATAACTCAGTTTATAAATGAGGTGACAATCACTGGCAGCACTCCATCAACACCCAAACTAGGTGATCAAATGAGTTCGAATGCTAACTCTCCGGATAGAGAGTCATTTAGTGACTGGATGGATTGTGCAATACCCCTTGATGGTGCAGCTATTATTACTGCTGCTGCTGCAGGGATTATATCTGATGATGAAATCATACAGTTATCACCTAAAATATGGGATTCTCGCTGTCAATCTCCTGTAAGTGTGACTGCCAGTGATGCTTCAGATTATTGGCAGGTTAGGGATGTAGACAAGGATGGCAGGAAGAATCTGCAAGATCATGATAATTGTGCTTTTGAGGCCCCAGAAAATCTTGGTTCTATAGAAAGAATGCATGGAATTTGCGAAAATGACCAAGTTTCTCCAAAAGTTGGAACACCTTTTTCTGCTCGGAGTCGTGTCTTGGAGCGTCTTGGAAGTTCCGAATCACTTTTCAGTCCAGTTAGAAGCATGGCATCAGATAACGAGGAAGATTTTTTCTCAAACAATGAAAGAGATTACGGGGACGAATTGTTAATGGAATGGGCCATGGAGAATAAGAATGATTTGCTACAGATAGTGTGTAGATATCATGCTGAACCTATTCCACCTCGAGGAAGTGAATTAGTCTTCCACCCTCTCGAACATTTACAAGCTATTCAGTACATACGACATTCAGTTGCTTCTCTTGACTTCAGCAATGATTGTTCAAATTGTTCTGAACCAGCTCAGGACAATGCAAAGCTGGCAGCTGCCGAGGAAGCCCTGTCATTATCAGTATGGACGATGGCAACTACTTGTCGAGTTCTGTCCCTTGATAGTGTGCTGGCATTAATTACAGGAGTTTTGTTGGAAAAACAAGTGGTAATAGTGTGCCCAAATCTGGGTGTTCTATCTGCCACTGTGCTTTCTCTTATTCCCATGATTCGTCCATTTCAGTGGCAGAGTTTATTGCTCCCTGTTTTACCTGGGAAAATGATTGATTTTCTTGATGCCCCAGTTCCATATATTGTTGGCATACAACATAAACCAGATGACTTGAATATGAAAACTACTAATCTTGTTCTTGTTAATATACCAAAGGATCAGATTACAATGTGTCACTTACCAAGACTTCCACAACATAGAGAGCTTCTCTCTCAGTTGACTCCAATTCATGCTAAACTTTCAAATGAAAGATCAATTGCTAGAAAGCATCCTGTACATAGGTGCAACGAAGTACAGGCTGAAGCTGCAACACAGTTTTTGAATATAATGTGGCACTATTTGGAATCACTCTGCTCAGATCTGAAATCTCACACGATCACTAGTGTACAATCAAATAACGACAGGGTTTCTTTACTTCTTAAAGATAGCTTCATTGATTCATTTCCTGCAAGGGACCAGCCATTCATTAAGCTATTTGTAGATACACAGCTCTTCACTGTTTTATCAGACTCACGTTTGTCAAGCTTTGAGAGTGGCGAGTCATAG

Predicted protein sequences of Glyma19g35330

Limit To All Plant Sequences

>Glyma19g35330.2   sequence type=predicted peptide   gene model=Glyma19g35330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSKEEAEPHEDRPTSPMRVLQQLSEGAFRVAGEAFHNMYSGGGSSKSQMGPGAHRRSQSELVTRGVERTNSFQKLRSHVHKAWRWGGRFRQEVSPASFNPEVMANQKRQWYQLHPRSLGCVHYKEPTSLFEHFLIVGLHPDANLEDVEHAFVRRKKWEKEKPEFLDYKMLQQQRPPEPTLEPQLLFKYPPAKKLTMRMKDLAPFCFPEGVKAWLLERTPSLSELNELVYGQEHLGKDDLSFVFTIKAADNTTLYGVCLHVPEIVQRPPGILGISSPFSHPSGACSRFLVSAPRCYCLLTRVPFFELHFEMLNSLIAQERLNRITQFINEVTITGSTPSTPKLGDQMSSNANSPDRESFSDWMDCAIPLDGAAIITAAAAGIISDDEIIQLSPKIWDSRCQSPVSVTASDASDYWQVRDVDKDGRKNLQDHDNCAFEAPENLGSIERMHGICENDQVSPKVGTPFSARSRVLERLGSSESLFSPVRSMASDNEEDFFSNNERDYGDELLMEWAMENKNDLLQIVCRYHAEPIPPRGSELVFHPLEHLQAIQYIRHSVASLDFSNDCSNCSEPAQDNAKLAAAEEALSLSVWTMATTCRVLSLDSVLALITGVLLEKQVVIVCPNLGVLSATVLSLIPMIRPFQWQSLLLPVLPGKMIDFLDAPVPYIVGIQHKPDDLNMKTTNLVLVNIPKDQITMCHLPRLPQHRELLSQLTPIHAKLSNERSIARKHPVHRCNEVQAEAATQFLNIMWHYLESLCSDLKSHTITSVQSNNDRVSLLLKDSFIDSFPARDQPFIKLFVDTQLFTVLSDSRLSSFESGES*

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