Glyma19g35290 - SoyBase

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Report for Sequence Feature Glyma19g35290

Feature Type:	gene_model
Chromosome:	Gm19
Start:	42829222
stop:	42832813
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01435	AT	Annotation by Michelle Graham. TAIR10: Expressed protein \| chr3:166853-167984 REVERSE LENGTH=115	SoyBase	E_val: 7.00E-58	ISS
GO:0006357	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016592	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mediator complex	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF10280	PFAM	Mediator complex protein	JGI		ISS
UniRef100_C6SYN4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYN4_SOYBN	SoyBase	E_val: 2.00E-79	ISS
UniRef100_Q6ID77	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Mediator of RNA polymerase II transcription subunit 11 n=1 Tax=Arabidopsis thaliana RepID=MED11_ARATH	SoyBase	E_val: 3.00E-55	ISS

Expression Patterns of Glyma19g35290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35290

Paralog	Evidence	Comments
Glyma03g32550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g169600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g35290

Limit To All Plant Sequences

>Glyma19g35290.2   sequence type=transcript   gene model=Glyma19g35290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTATATATAGTATTTGATTGATGAATTTAAAATTTTAGAATTTGAAAAAGTAATTTACAACTACCTAAAAACACATAATTCTAAATCCCCTCAAAATAGTTCTGGATCGAAAGGCGAGGCGGACCTTCGGGCGTTGCTCGCTCTCGACACCAGCACTCTCTCTGTGTTCTCATTGGTTCTGGCTCTCAAGCTCTCTCTATCTCTCTCTCTCTCTGAGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGAAAATGTAGCTTAGTTCCCTGTAGAAGCCTGGGTTACCACCCGGTAATTGACTTATTTGGGATTGCTTATTACTAGTTAGCGTGTTGTTTTGGATGGGGTAACAATTACCCTTGTAGCGATAGGAAATCAGTGTATTTATTTGGATGATTATATAGTAGAATATCCAATGAGTGTGGATTATTTTGTTCCCCCTATCTTATTACGGGTAACACATTTGGATGATTATATAGAAGAATAACTCAGTTTCTTGCTACCTTGTTCCACCCTTGGACAGTTATGTCCTTATCTGTGGCCTCATTAATTTCCTGCAAGAAGAAAATGATTATCTTAGAAACATGTGAAAAGTTAA

>Glyma19g35290.4   sequence type=transcript   gene model=Glyma19g35290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCTCAAAATAGTTCTGGATCGAAAGGCGAGGCGGACCTTCGGGCGTTGCTCGCTCTCGACACCAGCACTCTCTCTGTGTTCTCATTGGTTCTGGCTCTCAAGCTCTCTCTATCTCTCTCTCTCTCTGAGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGAAAATGTAGCTTAGTTCCCTGTAGAAGCCTGGGTTACCACCCGGTAATTGACTTATTTGGGATTGCTTATTACTAGTTAGCGTGTTGTTTTGGATGGGGTAACAATTACCCTTGTAGCGATAGGAAATCAGTGTATTTATTTGGATGATTATATAGTAGAATATCCAATGAGTGTGGATTATTTTGTTCCCCCTATCTTATTACGGGTAACACATTTGGATGATTATATAGAAGAATAACTCAGTTTCTTGCTA

>Glyma19g35290.5   sequence type=transcript   gene model=Glyma19g35290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCTCAAAATAGTTCTGGATCGAAAGGCGAGGCGGACCTTCGGGCGTTGCTCGCTCTCGACACCAGCACTCTCTCTGTGTTCTCATTGGTTCTGGCTCTCAAGCTCTCTCTATCTCTCTCTCTCTCTGAGAAGGAACACAAGGAATCAACAACCATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGAAAATGTAGCTTAGTTCCCTGTAGAAGCCTGGGTTACCACCCGGTAATTGACTTATTTGGGATTGCTTATTACTAGTTAGCGTGTTGTTTTGGATGGGGTAACAATTACCCTTGTAGCGATAGGAAATCAGTGTATTTATTTGGATGATTATATAGTAGAATATCCAATGAGTGTGGATTATTTTGTTCCCCCTATCTTATTACGGGTAACACATTTGGATGATTATATAGAAGAATAACTCAGTTTCTTGCTA

Coding sequences of Glyma19g35290

Limit To All Plant Sequences

>Glyma19g35290.1   sequence type=CDS   gene model=Glyma19g35290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGA

>Glyma19g35290.2   sequence type=CDS   gene model=Glyma19g35290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGA

>Glyma19g35290.4   sequence type=CDS   gene model=Glyma19g35290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGAGAATTGTGAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGA

>Glyma19g35290.5   sequence type=CDS   gene model=Glyma19g35290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCACAGGGCCAGACAACTTCATTGCAGAGACTTCAGAATGTAGAAAAGGTTTTGGAGCTTGCAGGAGGAGTCATGGATGAGCTTGCAAGCCCTGTTGGTCCTAGGAAGGATGTGGTCCAAAACCACTGCCTTGAGTTCATGCAATTAATCAAGGACATTCAGGTTGCATTGCGGGATGAAATCAAAAGTGCTTGTGAATATCGTCCATTTGAGAAATGTGACTATGGTTCAAGAATCGCCAATGAGATTTGTCACAAGAAAGTGGAATTTATTATGTCACAGTTAGATGCAATGAAACAAACTATAGATGAGTATCATGCAGCAGTTTGA

Predicted protein sequences of Glyma19g35290

Limit To All Plant Sequences

>Glyma19g35290.1   sequence type=predicted peptide   gene model=Glyma19g35290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSQGQTTSLQRLQNVEKRIVKVLELAGGVMDELASPVGPRKDVVQNHCLEFMQLIKDIQVALRDEIKSACEYRPFEKCDYGSRIANEICHKKVEFIMSQLDAMKQTIDEYHAAV*

>Glyma19g35290.2   sequence type=predicted peptide   gene model=Glyma19g35290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSQGQTTSLQRLQNVEKRIVKVLELAGGVMDELASPVGPRKDVVQNHCLEFMQLIKDIQVALRDEIKSACEYRPFEKCDYGSRIANEICHKKVEFIMSQLDAMKQTIDEYHAAV*

>Glyma19g35290.4   sequence type=predicted peptide   gene model=Glyma19g35290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSQGQTTSLQRLQNVEKRIVKVLELAGGVMDELASPVGPRKDVVQNHCLEFMQLIKVALRDEIKSACEYRPFEKCDYGSRIANEICHKKVEFIMSQLDAMKQTIDEYHAAV*

>Glyma19g35290.5   sequence type=predicted peptide   gene model=Glyma19g35290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSQGQTTSLQRLQNVEKVLELAGGVMDELASPVGPRKDVVQNHCLEFMQLIKDIQVALRDEIKSACEYRPFEKCDYGSRIANEICHKKVEFIMSQLDAMKQTIDEYHAAV*

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