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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04120 | AT | Annotation by Michelle Graham. TAIR10: multidrug resistance-associated protein 5 | chr1:1064848-1070396 REVERSE LENGTH=1514 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
| GO:0030007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular potassium ion homeostasis | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0000325 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008281 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sulfonylurea receptor activity | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| GO:0042626 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances | SoyBase | N/A | ISS |
| KOG0054 | KOG | Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily | JGI | ISS | |
| PTHR24223 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24223:SF202 | Panther | JGI | ISS | ||
| PF00005 | PFAM | ABC transporter | JGI | ISS | |
| PF00664 | PFAM | ABC transporter transmembrane region | JGI | ISS | |
| UniRef100_E3Q0A7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance-associated protein 1 n=1 Tax=Phaseolus vulgaris RepID=E3Q0A7_PHAVU | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F01B | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F01B related cluster n=1 Tax=unknown RepID=UPI000233F01B | SoyBase | E_val: 0 | ISS |
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Glyma19g35230 not represented in the dataset |
Glyma19g35230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g32500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g169000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g35230.2 sequence type=CDS gene model=Glyma19g35230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGTCGATGAAATTGAAATATTGTCTTCGACGTTGTTTTCTTCTTCTTCTTCGGGATCGTTTGAGATCCTTTGGAGTGCGATCCTCGGATTGCCTTTGTTGGAACTGGTGGCAATCTGTGCCAACCTGACACTGTTTATTCTCTTTCTCGTCGTTGTTTCGGCGAGGAAGGTGCTTGTGTGTGTATGGGGAGGAGTTAGATTCGGTAAGGAGAACGGAACCGGCAATGCCAGCCCCGGTTGTGTTAGTGTTGATTTGGAAACACGTGACATTCGGATTGAAACGTGGTTCAAGTTGTCGGTGTTGTCTTGTTTCTATGTTCTGTTGGTGCAAGTTTTGGTCTTGGGGTTTGATGGGGTTGCTTTGATTAGAGGAAGGGATTTGGATTTGGATTTGGGTTTGGCTCTTCTTTCTGTGCCTCTTGTGCAGGGTTTAGCTTGGGTTGTGTTGAGCTTCTCGGCTTTGCAATGCAAATTCAAGGCGTGTGAGAGGTTTCCAGTTTTGCTTAGAGTTTGGTTATTTGTGGTGTTCGTTATTTGTTTGTGTGGTTTGTATGTTGATGGAAGGGGGGTTTGGATGGAAGGTTCCAAGCACCTGCGTTCTCATGTTGTGGCGAATTTCGCCGTCACTCCTGCTCTTGCCTTTTTGTGTATTGTGGCAATTAGGGGTGTTACTGGTATAAAGGTTTTTAGGAGTTCTGAGGAGCAACAGCCATTGCTTGTTGATGAGGATCCCGGGTGTCTCAAGGTTACTCCTTATAGTGATGCTGGACTTTTTAGCTTGGCCATTTTGTCTTGGTTGAATCCACTTCTTTCCATTGGGGCAAAAAGGCCGCTTGAGCTTAAGGACATTCCCCTTGTTGCGCCGAAAGACCGATCCAAGACAAATTATAAGGTTTTGAATTCTAATTGGGAGAGGTTGAAGGCTGAAAACCTATCCGGGCAGCCTTCGTTGGCTTGGGCACTTCTCAAATCCTTCTGGAAGGAGGCGGCTTGTAACGCTGTGTTTGCTGGTGTCACTACTCTTGTCTCGTATGTTGGTCCATATATGATAAGTTACTTTGTTGATTACTTGGTTGGCAAAGAGATTTTCCCACATGAGGGGTATGTCCTTGCAGGGGTATTCTTTGTGGCAAAGCTTGTGGAGACCTTTACTACTAGGCAGTGGTATCTTGGGGTGGATATCTTGGGTATGCATGTTAGGTCGGCTCTAACTGCAATGGTATATCGAAAGGGGCTAAGGATATCAAGCTTGGCCAAGCAAAGTCACACGAGCGGGGAGGTTGTTAACTACATGGCTATTGATGTTCAGAGGGTAGGGGACTACTCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTGCGATTTTGTATAAGAATGTTGGAATTGCTTCTATTGCAACACTGATTGCTACAATAATTTCCATCGCGGTCACTGTTCCTATTGCCAGGATCCAAGAAAATTATCAAGACAAATTAATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCTGAGTGCCTGAGGAATATGAGGATTCTCAAACTTCAAGCTTGGGAGGATAGATATAGAGTGAAATTGGAGGAAATGCGAGGAGTAGAGTTCAAGTGGCTTCGGAAAGCTCTCTATTCTCAGGCTTTCATAACTTTCATATTCTGGAGCTCCCCTATATTTGTTTCAGCAGTCACTTTTGGTACTTCCATATTGTTGGGTGGTCAGCTGACTGCTGGTGGTGTACTTTCTGCTTTGGCTACTTTCAGGATCCTGCAAGAACCTTTGAGGAATTTTCCGGACTTGGTGTCAACAATGGCTCAGACAAAGGTTTCTCTTGACCGATTATCTGGTTTCCTGCTGGAGGAGGAATTGCAGGAAGATGCAACTATTGTCTTGCCACAAGGCATTACTAACATTGCTATAGAAATTAAGGGTGGTGTCTTCTGTTGGGACCCTTCTTCATCTTCTAGACCTACCCTATCAGGGATAAGTATGAAAGTTGAAAGAAGGATGCGTGTGGCTGTTTGTGGTATGGTTGGTTCAGGGAAATCAAGTTTTCTTTTGTGCATCCTTGGAGAGATTCCTAAAATTTCTGGTGAAGTTAGAGTGTGTGGCTCTTCTGCATATGTCTCCCAATCAGCATGGATACAATCAGGAACTATAGAAGAAAATATCCTCTTTGGAAGCCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACATGGTGATCTTACAATTATTGGGGATAGAGGTATAAACCTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTGGCTCGGGCACTCTACCAAGATGCTGATATTTATCTTCTTGATGATCCCTTCAGTGCAGTTGATGCTCACACTGGATCAGACTTGTTTAGGGAGTATATATTGACAGCACTTGCAGATAAAACAGTCATTTATGTGACCCATCAAGTTGAATTTCTTCCTGCTGCTGATTTGATATTGGTTCTCAAAGAAGGATGCATCATACAGTCAGGAAAGTATGACGATCTTTTACAAGCAGGAACAGATTTTAATACTCTGGTTTCAGCTCACAATGAAGCCATAGAGGCCATGGATATCCCTACTCACTCTGAAGATTCAGATGAAAATTTATCCCTGGAGGCATGTGTTATGACCAGTAAGAAATCCATTTGTTCTGCAAATGATATAGACAGTTTGGCAAAGGAAGTGCAAGAGGGATCATCTATTTCAGATCAAAAAGCAATTAAAGAGAAGAAGAAAGCAAAACGATCGAGAAAGAAACAGCTTGTTCAGGAAGAGGAGAGGATTAGAGGTAGAGTCAGCATGAAGGTGTATTTGTCATACATGGCAGCAGCATATAAAGGCTTATTGATTCCACTCATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATTGCTAGCAATTGGTGGATGGCTTGGGCTAATCCTCAAACAGAAGGAGACCTGCCCAAAGTAACTCCCTCAGTTCTTCTTCTTGTTTATATGGCCCTTGCTTTTGGCAGCTCATGGTTTATATTTGTAAGGGCTGTTCTGGTGGCTACGTTTGGTCTTGCAGCTGCACAGAAGCTATTTTTGAAAATGCTTAGAAGTGTTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATTTTGAATCGGGTATCAATTGATCAAAGTGTTGTGGATCTTGACATTCCTTTTAGACTTGGTGGGTTTGCTTCAACAACAATACAGCTTATTGGTATTGTTGGTGTAATGACAGAAGTTACGTGGCAAGTTTTGCTCTTAGTTGTCCCAATGGCTGTTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTTCGAATTGTTAGCATCCAGAAGTCTCCAATTATACATCTTTTTGGTGAATCTATTGCTGGAGCATCCACCATCAGGGGTTTTGGACAAGAAAAAAGGTTCATGAAGCGAAACCTCTATCTTCTTGATTGCTTTGCACGACCATTCTTCTGCAGTCTTTCTGCAATTGAGTGGCTCTGCCTGCGGATGGAGTTACTGTCAACCTTTGTATTTGCTTTCTGTATGGTATTACTTGTGAGTTTTCCTCGTGGAAGTATCGACCCCAGCATGGCTGGACTTGCTGTGACATATGGCCTGAATTTAAATGCACGTCTATCACGGTGGATACTCAGCTTTTGCAAACTTGAAAATAAAATTATATCTATTGAGAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCACCCACAGTTATTGAAGATTATCGCCCTCCATCCTCATGGCCTGAAAATGGGACAATTGAAATAATTGATTTGAAGATTCGTTACAAGGAGAATCTTCCTTTGGTGCTTTATGGAGTAACATGCACATTTCCTGGTGGAAAGAAGATTGGAATAGTAGGACGTACTGGCAGTGGAAAATCTACTTTAATTCAGGCGTTATTTCGATTGATTGAACCAACAAGTGGGAGTATCCTTATAGACAACATTAATATTTCAGAGATTGGCCTTCATGACCTTCGAAGCCATCTCAGTATCATACCACAAGATCCAACCTTATTTGAAGGTACCATTCGAGGCAATCTTGATCCTCTGGATGAGCACTCAGATAAAGAGATTTGGGAGGCACTTGATAAGTCTCAGCTTGGAGAGGTTATCCGTGAGAAAGGACAACAGCTTGATACGCCAGTTCTAGAAAATGGAGATAATTGGAGTGTAGGACAGCGACAACTTGTTGCTCTGGGCCGAGCTCTGCTGCAGCAGTCAAGAATACTTGTACTAGATGAAGCAACAGCATCAGTTGATACCGCCACAGATAATCTTATACAGAAGATTATCCGAAGTGAGTTCAAAGAATGCACTGTTTGCACCATTGCACATCGAATACCTACTGTCATTGACAGTGATCTAGTTCTTGTGCTCAGTGATGGTCGAGTTGCAGAGTTCAACACTCCTTCAAGACTATTAGAGGATAAGTCATCCATGTTTCTGAAGCTGGTGACTGAGTACTCATCACGTTCAAGTGGCATACCAGACTTTTAG
>Glyma19g35230.2 sequence type=predicted peptide gene model=Glyma19g35230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVDEIEILSSTLFSSSSSGSFEILWSAILGLPLLELVAICANLTLFILFLVVVSARKVLVCVWGGVRFGKENGTGNASPGCVSVDLETRDIRIETWFKLSVLSCFYVLLVQVLVLGFDGVALIRGRDLDLDLGLALLSVPLVQGLAWVVLSFSALQCKFKACERFPVLLRVWLFVVFVICLCGLYVDGRGVWMEGSKHLRSHVVANFAVTPALAFLCIVAIRGVTGIKVFRSSEEQQPLLVDEDPGCLKVTPYSDAGLFSLAILSWLNPLLSIGAKRPLELKDIPLVAPKDRSKTNYKVLNSNWERLKAENLSGQPSLAWALLKSFWKEAACNAVFAGVTTLVSYVGPYMISYFVDYLVGKEIFPHEGYVLAGVFFVAKLVETFTTRQWYLGVDILGMHVRSALTAMVYRKGLRISSLAKQSHTSGEVVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKNVGIASIATLIATIISIAVTVPIARIQENYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRVKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFGTSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLLEEELQEDATIVLPQGITNIAIEIKGGVFCWDPSSSSRPTLSGISMKVERRMRVAVCGMVGSGKSSFLLCILGEIPKISGEVRVCGSSAYVSQSAWIQSGTIEENILFGSPMDKAKYKNVLHACSLKKDLELFSHGDLTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFREYILTALADKTVIYVTHQVEFLPAADLILVLKEGCIIQSGKYDDLLQAGTDFNTLVSAHNEAIEAMDIPTHSEDSDENLSLEACVMTSKKSICSANDIDSLAKEVQEGSSISDQKAIKEKKKAKRSRKKQLVQEEERIRGRVSMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDLPKVTPSVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTEVTWQVLLLVVPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLSAIEWLCLRMELLSTFVFAFCMVLLVSFPRGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTVIEDYRPPSSWPENGTIEIIDLKIRYKENLPLVLYGVTCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPTSGSILIDNINISEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLDEHSDKEIWEALDKSQLGEVIREKGQQLDTPVLENGDNWSVGQRQLVALGRALLQQSRILVLDEATASVDTATDNLIQKIIRSEFKECTVCTIAHRIPTVIDSDLVLVLSDGRVAEFNTPSRLLEDKSSMFLKLVTEYSSRSSGIPDF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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