Glyma19g35210 - SoyBase

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Report for Sequence Feature Glyma19g35210

Feature Type:	gene_model
Chromosome:	Gm19
Start:	42753210
stop:	42756626
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G20370	AT	Annotation by Michelle Graham. TAIR10: Exostosin family protein \| chr2:8792355-8794214 FORWARD LENGTH=619	SoyBase	E_val: 0	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0009863	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009969	GO-bp	Annotation by Michelle Graham. GO Biological Process: xyloglucan biosynthetic process	SoyBase	N/A	ISS
GO:0010256	GO-bp	Annotation by Michelle Graham. GO Biological Process: endomembrane system organization	SoyBase	N/A	ISS
GO:0042353	GO-bp	Annotation by Michelle Graham. GO Biological Process: fucose biosynthetic process	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0030173	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to Golgi membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG1021	KOG	Acetylglucosaminyltransferase EXT1/exostosin 1	JGI		ISS
PTHR11062	Panther	EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED	JGI		ISS
PF03016	PFAM	Exostosin family	JGI		ISS
UniRef100_G7KYE9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xyloglucan galactosyltransferase KATAMARI1 n=1 Tax=Medicago truncatula RepID=G7KYE9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F448	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F448 related cluster n=1 Tax=unknown RepID=UPI000233F448	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g35210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35210

Paralog	Evidence	Comments
Glyma03g32481	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g168800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g35210

Limit To All Plant Sequences

>Glyma19g35210.3   sequence type=transcript   gene model=Glyma19g35210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGGGTAAAGAGGTTATTGACGCACGTCCATAGTCGCCTGGGGCAAACCGACACGTGACAGCATCCGTGACCGACGCGCGACAGTTGCCAGCGCACGTTGCTAACGTGCACGGTGCACCTGATTGATTTGTTCTCTTCTTCTTCTCCGAACTCTGCACATTCATTACCTCTCCACTTATCTAATCTCGATTCCTCAACTCACCATCCGCGTTCATTTTCCCTCCCAACTCACTCGTCCCCTTTTCACTTTCATTCATTCATGACTCTCTCCTTTTCTATCGGAACCACCATCCAATGAGACGGCGCCCCGTGGCGGGTGTTCTCCCCGACCAAATGGAGAAAGCAAACACCAAAAACCCTAATTCCAGACTTTGCTTTCTCGCTTCCCTCTCCGTATTCTTCTGGTTCCTCCTCCTCTACTTCCACTTCGCCGTCCTCCGCCACCAACCCACCAACCCTAACCCCGTAGTCCCCATCACTCTCCAACCTCAACAACCTCGTAAAAACCTCGGCTTCCCCGAGAAAATTTCCCAACCGGAGAAACCCACTTTCCCCTTCGACCGTGCCCTCCGAACCGCCGACAACAAGAGCGACCCATGCGGGGGGCGCTACATCTACGTCCACGACCTCCCCTCGCGCTTCAACGAGGACATGTTAAAGCATTGCAGAAGCTTATCTCTTTGGACCAACATGTGCAAGTTCACCACCAATGCCGGCCTCGGTCCGCCGTTGGAGAACGTTAACGGTGTGTTCTCCGACACCGGCTGGTATGCCACCAACCAGTTCACCGTCGACGTCATCTTCAGCAACAGGATGAAGCAGTACCAATGCCTCACTCGAGATCCTTCCGTCGCCGCCGCATTCTTCGTCCCCTTCTACGCCGGCTTTGACATCGCCCGCTATCTATGGGGTTACAACATCTCAATGCGCGATGCTGCATCGCTTGACCTCGTGAATTGGCTCATGAATAGACCGGAGTGGAAGATCATGAATGGGAGAGACCATTTTCTTGTCGCCGGTAGGATCACATGGGATTTTCGAAGACTCACTGAAGAAGAATCGGATTGGGGGAACAAGCTTTTGTTTTTGCCCGCTGCGAAGAACATGTCGATGCTTGTGGTGGAGTCAAGTCCTTGGAATGCCAATGATTTCGGGATTCCGTATCCGACTTATTTTCATCCTGCCAAGGATGATGATGTGTTCACCTGGCAGGAGAGGATGAGGAGGCTGGAGAGGAAGTGGTTGTTTTCGTTTGCCGGAGCTCCGCGGCCGGATAACCCGAAATCGATAAGGGGCCAGATTATTGAGCAGTGTAGGAGATCCAAAGTTGGGAAGCTGTTGGAGTGTGATTTTGGGGAGAGTAAGTGTCATTCCCCTAGTAGTATAATGCAGATGTTTCAAGGGTCGCTTTTCTGTCTTCAGCCTCAAGGGGATTCGTATACCAGAAGATCTGCTTTTGATTCAATGCTGGCTGGGTGTATACCAGTGTTCTTCCATCCGGGTTCGGCGTACACCCAGTATACATGGCATCTTCCTAAGAATTATACCAAGTACTCGGTGTTCATTCCGGAGGATGATCTTAGGAAGAGGAATGTTAGTATAGAAGAGAGGCTTAGTCAGATTCCTGAGGAGGAAGTTAGGATCATGAGGGAGGAGGTCATTGGTTTGATCCCTAGATTGGTGTACGCAGATCCTCGATCCAAACTTGAGACTCTTGAGGATGCATTTGATGTTTCGGTGCAGGCTGTGATTGACAAGGTTACCAACTTGAGGAAGGACATTATGGAAGGTCGCACGGACGAGAACTTCATTGAGGAGAACAGTTGGAAGTACGCGTTGTTGGATGAGGGACAGCGCGAGGTTGGACCTCATGAATGGGATCCTTTCTTCTCCAAACCAAAGCCGGGTGGGGATTCCGATGATTTGTCAGCTGAGGCTGCGAAGAATTCTTGGAAAAATGAACAAAGAAATCAGTCGTGATTAGCAAAGGGGAGGAAATATAAACAAAATTATGGTTAGCAATGAACTCAAGTGTTCACTTGAATGGCAATATCATTTTGCAGCTGCATCATCAGAGCTGCCTACCTGTGTTGGTGATCTTATTTGGAAAGTGGTTAACATTCAAAAGATAGATTGTTCTATTTTGATGATCTTGAAAACAAATTTCTTTCACTTGCTCTATATTCCCTTTTTTTGTGTATTTTTTGATAGCTAAATCATGCACACATATTGGCTGGTATTAATGTACTGTTACAGGCTTTAATATGTCGAATTGATTGCTTTGATCAGCCAGTTTTAACATGCAATTTACAAAAACTACTGGCTGTTTCTTCGTTAACCGTTGCTTGTTTGTATCATTCATGTTTCTGGTGTTTTCTTCTTTTACTAAAAAATTATGAAAAAAATAAAAATTGGGGGCACAATGAAATGTACCCTTTTATTCATTTGATTTCCTTTGTTGTGGTATCTATTTGGTCAGCAATATTGAACGATTGGAATGTACCAAAAAGAAGTGGCATAGATTTCTTACTGAAATTATCTTGGACAGTTGGACTTCATTTCTTTCTTTGACATTTTTTGGAATGACTGTGGGTGGGATTTCACACTGTGATGAATTCACTTGCATGGCGATGCACAACATTTGGCAGTATTAGTCTTATGTTTGTCCTGTCTTGTTAATTTTAGAAAACCCTTCCTGCTTGTCCGTGTCTGAGTATCCTTTTTCTCTTTGTTGTCTTCGTGCTGTGTAGTATTACCTTGCAATGGGAAAGGGTATGGCTGTACAATGTGGCAAGAAATGATAGAGGAATTATGTGTGGAAAGTGATTATAAAAGGATGCGCAAGTAAACTGTAACGCAAACAAAATCACAGTCAATCGTTGTTTGTAGACTAGTGTTGTGTGATCAATATTATCATTTAATTTCATGTCTATTTTGTTTTGTCTCTTCAATTTTGAAGCAAAGAAAATGAAATTCCATTTATTTTGCTCTTTTGTATCTCTCTAGAGTCATAAATAATCTGAGATGACACGAAACTATGAAAACTTGTGTCAAATTTTTCTGTCAAATGTAGAAGAGGACTTGTCA

Coding sequences of Glyma19g35210

Limit To All Plant Sequences

>Glyma19g35210.2   sequence type=CDS   gene model=Glyma19g35210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACGGCGCCCCGTGGCGGGTGTTCTCCCCGACCAAATGGAGAAAGCAAACACCAAAAACCCTAATTCCAGACTTTGCTTTCTCGCTTCCCTCTCCGTATTCTTCTGGTTCCTCCTCCTCTACTTCCACTTCGCCGTCCTCCGCCACCAACCCACCAACCCTAACCCCGTAGTCCCCATCACTCTCCAACCTCAACAACCTCGTAAAAACCTCGGCTTCCCCGAGAAAATTTCCCAACCGGAGAAACCCACTTTCCCCTTCGACCGTGCCCTCCGAACCGCCGACAACAAGAGCGACCCATGCGGGGGGCGCTACATCTACGTCCACGACCTCCCCTCGCGCTTCAACGAGGACATGTTAAAGCATTGCAGAAGCTTATCTCTTTGGACCAACATGTGCAAGTTCACCACCAATGCCGGCCTCGGTCCGCCGTTGGAGAACGTTAACGGTGTGTTCTCCGACACCGGCTGGTATGCCACCAACCAGTTCACCGTCGACGTCATCTTCAGCAACAGGATGAAGCAGTACCAATGCCTCACTCGAGATCCTTCCGTCGCCGCCGCATTCTTCGTCCCCTTCTACGCCGGCTTTGACATCGCCCGCTATCTATGGGGTTACAACATCTCAATGCGCGATGCTGCATCGCTTGACCTCGTGAATTGGCTCATGAATAGACCGGAGTGGAAGATCATGAATGGGAGAGACCATTTTCTTGTCGCCGGTAGGATCACATGGGATTTTCGAAGACTCACTGAAGAAGAATCGGATTGGGGGAACAAGCTTTTGTTTTTGCCCGCTGCGAAGAACATGTCGATGCTTGTGGTGGAGTCAAGTCCTTGGAATGCCAATGATTTCGGGATTCCGTATCCGACTTATTTTCATCCTGCCAAGGATGATGATGTGTTCACCTGGCAGGAGAGGATGAGGAGGCTGGAGAGGAAGTGGTTGTTTTCGTTTGCCGGAGCTCCGCGGCCGGATAACCCGAAATCGATAAGGGGCCAGATTATTGAGCAGTGTAGGAGATCCAAAGTTGGGAAGCTGTTGGAGTGTGATTTTGGGGAGAGTAAGTGTCATTCCCCTAGTAGTATAATGCAGATGTTTCAAGGGTCGCTTTTCTGTCTTCAGCCTCAAGGGGATTCGTATACCAGAAGATCTGCTTTTGATTCAATGCTGGCTGGGTGTATACCAGTGTTCTTCCATCCGGGTTCGGCGTACACCCAGTATACATGGCATCTTCCTAAGAATTATACCAAGTACTCGGTGTTCATTCCGGAGGATGATCTTAGGAAGAGGAATGTTAGTATAGAAGAGAGGCTTAGTCAGATTCCTGAGGAGGAAGTTAGGATCATGAGGGAGGAGGTCATTGGTTTGATCCCTAGATTGGTGTACGCAGATCCTCGATCCAAACTTGAGACTCTTGAGGATGCATTTGATGTTTCGGTGCAGGCTGTGATTGACAAGGTTACCAACTTGAGGAAGGACATTATGGAAGGTCGCACGGACGAGAACTTCATTGAGGAGAACAGTTGGAAGTACGCGTTGTTGGATGAGGGACAGCGCGAGGTTGGACCTCATGAATGGGATCCTTTCTTCTCCAAACCAAAGCCGGGTGGGGATTCCGATGATTTGTCAGCTGAGGCTGCGAAGAATTCTTGGAAAAATGAACAAAGAAATCAGTCGTGA

>Glyma19g35210.3   sequence type=CDS   gene model=Glyma19g35210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGACGGCGCCCCGTGGCGGGTGTTCTCCCCGACCAAATGGAGAAAGCAAACACCAAAAACCCTAATTCCAGACTTTGCTTTCTCGCTTCCCTCTCCGTATTCTTCTGGTTCCTCCTCCTCTACTTCCACTTCGCCGTCCTCCGCCACCAACCCACCAACCCTAACCCCGTAGTCCCCATCACTCTCCAACCTCAACAACCTCGTAAAAACCTCGGCTTCCCCGAGAAAATTTCCCAACCGGAGAAACCCACTTTCCCCTTCGACCGTGCCCTCCGAACCGCCGACAACAAGAGCGACCCATGCGGGGGGCGCTACATCTACGTCCACGACCTCCCCTCGCGCTTCAACGAGGACATGTTAAAGCATTGCAGAAGCTTATCTCTTTGGACCAACATGTGCAAGTTCACCACCAATGCCGGCCTCGGTCCGCCGTTGGAGAACGTTAACGGTGTGTTCTCCGACACCGGCTGGTATGCCACCAACCAGTTCACCGTCGACGTCATCTTCAGCAACAGGATGAAGCAGTACCAATGCCTCACTCGAGATCCTTCCGTCGCCGCCGCATTCTTCGTCCCCTTCTACGCCGGCTTTGACATCGCCCGCTATCTATGGGGTTACAACATCTCAATGCGCGATGCTGCATCGCTTGACCTCGTGAATTGGCTCATGAATAGACCGGAGTGGAAGATCATGAATGGGAGAGACCATTTTCTTGTCGCCGGTAGGATCACATGGGATTTTCGAAGACTCACTGAAGAAGAATCGGATTGGGGGAACAAGCTTTTGTTTTTGCCCGCTGCGAAGAACATGTCGATGCTTGTGGTGGAGTCAAGTCCTTGGAATGCCAATGATTTCGGGATTCCGTATCCGACTTATTTTCATCCTGCCAAGGATGATGATGTGTTCACCTGGCAGGAGAGGATGAGGAGGCTGGAGAGGAAGTGGTTGTTTTCGTTTGCCGGAGCTCCGCGGCCGGATAACCCGAAATCGATAAGGGGCCAGATTATTGAGCAGTGTAGGAGATCCAAAGTTGGGAAGCTGTTGGAGTGTGATTTTGGGGAGAGTAAGTGTCATTCCCCTAGTAGTATAATGCAGATGTTTCAAGGGTCGCTTTTCTGTCTTCAGCCTCAAGGGGATTCGTATACCAGAAGATCTGCTTTTGATTCAATGCTGGCTGGGTGTATACCAGTGTTCTTCCATCCGGGTTCGGCGTACACCCAGTATACATGGCATCTTCCTAAGAATTATACCAAGTACTCGGTGTTCATTCCGGAGGATGATCTTAGGAAGAGGAATGTTAGTATAGAAGAGAGGCTTAGTCAGATTCCTGAGGAGGAAGTTAGGATCATGAGGGAGGAGGTCATTGGTTTGATCCCTAGATTGGTGTACGCAGATCCTCGATCCAAACTTGAGACTCTTGAGGATGCATTTGATGTTTCGGTGCAGGCTGTGATTGACAAGGTTACCAACTTGAGGAAGGACATTATGGAAGGTCGCACGGACGAGAACTTCATTGAGGAGAACAGTTGGAAGTACGCGTTGTTGGATGAGGGACAGCGCGAGGTTGGACCTCATGAATGGGATCCTTTCTTCTCCAAACCAAAGCCGGGTGGGGATTCCGATGATTTGTCAGCTGAGGCTGCGAAGAATTCTTGGAAAAATGAACAAAGAAATCAGTCGTGA

Predicted protein sequences of Glyma19g35210

Limit To All Plant Sequences

>Glyma19g35210.2   sequence type=predicted peptide   gene model=Glyma19g35210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRRPVAGVLPDQMEKANTKNPNSRLCFLASLSVFFWFLLLYFHFAVLRHQPTNPNPVVPITLQPQQPRKNLGFPEKISQPEKPTFPFDRALRTADNKSDPCGGRYIYVHDLPSRFNEDMLKHCRSLSLWTNMCKFTTNAGLGPPLENVNGVFSDTGWYATNQFTVDVIFSNRMKQYQCLTRDPSVAAAFFVPFYAGFDIARYLWGYNISMRDAASLDLVNWLMNRPEWKIMNGRDHFLVAGRITWDFRRLTEEESDWGNKLLFLPAAKNMSMLVVESSPWNANDFGIPYPTYFHPAKDDDVFTWQERMRRLERKWLFSFAGAPRPDNPKSIRGQIIEQCRRSKVGKLLECDFGESKCHSPSSIMQMFQGSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYTQYTWHLPKNYTKYSVFIPEDDLRKRNVSIEERLSQIPEEEVRIMREEVIGLIPRLVYADPRSKLETLEDAFDVSVQAVIDKVTNLRKDIMEGRTDENFIEENSWKYALLDEGQREVGPHEWDPFFSKPKPGGDSDDLSAEAAKNSWKNEQRNQS*

>Glyma19g35210.3   sequence type=predicted peptide   gene model=Glyma19g35210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRRPVAGVLPDQMEKANTKNPNSRLCFLASLSVFFWFLLLYFHFAVLRHQPTNPNPVVPITLQPQQPRKNLGFPEKISQPEKPTFPFDRALRTADNKSDPCGGRYIYVHDLPSRFNEDMLKHCRSLSLWTNMCKFTTNAGLGPPLENVNGVFSDTGWYATNQFTVDVIFSNRMKQYQCLTRDPSVAAAFFVPFYAGFDIARYLWGYNISMRDAASLDLVNWLMNRPEWKIMNGRDHFLVAGRITWDFRRLTEEESDWGNKLLFLPAAKNMSMLVVESSPWNANDFGIPYPTYFHPAKDDDVFTWQERMRRLERKWLFSFAGAPRPDNPKSIRGQIIEQCRRSKVGKLLECDFGESKCHSPSSIMQMFQGSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYTQYTWHLPKNYTKYSVFIPEDDLRKRNVSIEERLSQIPEEEVRIMREEVIGLIPRLVYADPRSKLETLEDAFDVSVQAVIDKVTNLRKDIMEGRTDENFIEENSWKYALLDEGQREVGPHEWDPFFSKPKPGGDSDDLSAEAAKNSWKNEQRNQS*

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