Report for Sequence Feature Glyma19g35160
Feature Type: gene_model
Chromosome: Gm19
Start: 42715278
stop: 42717101
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g35160
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G17940 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:9965787-9966778 FORWARD LENGTH=274
SoyBase E_val: 4.00E-33 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
PTHR23083 Panther
O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT
JGI ISS
PTHR23083:SF102 Panther
SUBFAMILY NOT NAMED
JGI ISS
UniRef100_G7KXF9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: TPR domain protein n=2 Tax=Medicago truncatula RepID=G7KXF9_MEDTR
SoyBase E_val: 3.00E-115 ISS
UniRef100_I1JP77 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JP77_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g35160
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g35160
Paralog Evidence Comments
Glyma03g32430 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g35160 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
References for Glyma19g35160
Coding sequences of Glyma19g35160
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g35160.2 sequence type=CDS gene model=Glyma19g35160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGCTAAGAAGCTCTTCAACACCAGTTCTTGGATCCCTCCTCTCATCCTTCCCAGATAGTCCTAACAACAATATTCACTCAGAAACCTGTCATGCACTTAAACACTTTCCACCAACCAGTGTCCCACAACCTTATCACAAACTTACTTGCCACCAAACCCGGTCCTTTGCATGTGGTTCTTCTCCAATCTCTCCCTCAATTGGTGAGCTTGAAAGGCAAAACAAAGGCTTTAGAAGAGTCCAATCTGATGGGAACTTGCAAGACTTGGCCTACTTTTCTTGCAACAATGAAGAAAGGTTGGAGTATTTAGACCCTTCCAAGAGGTTTTCAGCTAGACACAGGAGCTTGCACAATGGCTTGAGTGAAGAAGAGGAAGATGAAGAAATGGAAAGTGAGAGTGAAGATGGGTTCAGTGTGGTGAATGGTGGAAAGGATGTGATATTCAGTGAAGAGGTGAGAGTGAAGAATGGAGTTTGTAGGGTGAGTTTTGGTGACCAGGAAGAGGTTGGTAGTGGTAAAGAAATGTATCTTGCAAAGGGACTTGGTGTGGAGTGTTGTGGCGATGGCATAGGTGGTTGTAGAGGCGGCGGTGGTGGTGATCATAATCCCTTGGGTTCTGGAGGAAATGATGGAGATAGGCATGCAGTGGAAGAATATTACAAGAAAATGGTTAAGGAAAATCCTGGGGATCCATTGTTTCTGAGGAATTATGCTAATTTTTTGTATCAGTACAAACAAGACTGTGAAGGAGCAGAGGAGTATTATTCCCGCGCCATACTTGCAGACCCGGATGACGGAGAAGTTCTATCACAGTATGGGAAGTTAGTTTGGGAGCTACATCATGACCAAGAACGTGCCTCCAGCTATTTTGAAAGAGCAGTCCAAGCCTCTCCTGAAGACAGCCATGTACAAGCAGCATATGCTAGTTTCCTTTGGGACACGGAGGAAGACGAGGATGGTAGCAACGAACCACAATGTTTGCCGCCACATTCTCTTCAAGGAGCTATAGCTACTGCAGGTGCTTGA
Predicted protein sequences of Glyma19g35160
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g35160.2 sequence type=predicted peptide gene model=Glyma19g35160 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMLRSSSTPVLGSLLSSFPDSPNNNIHSETCHALKHFPPTSVPQPYHKLTCHQTRSFACGSSPISPSIGELERQNKGFRRVQSDGNLQDLAYFSCNNEERLEYLDPSKRFSARHRSLHNGLSEEEEDEEMESESEDGFSVVNGGKDVIFSEEVRVKNGVCRVSFGDQEEVGSGKEMYLAKGLGVECCGDGIGGCRGGGGGDHNPLGSGGNDGDRHAVEEYYKKMVKENPGDPLFLRNYANFLYQYKQDCEGAEEYYSRAILADPDDGEVLSQYGKLVWELHHDQERASSYFERAVQASPEDSHVQAAYASFLWDTEEDEDGSNEPQCLPPHSLQGAIATAGA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
