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Report for Sequence Feature Glyma19g35151

Feature Type:gene_model
Chromosome:Gm19
Start:42707098
stop:42714019
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g35151
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G43960AT Annotation by Michelle Graham. TAIR10: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:17689154-17691653 REVERSE LENGTH=450 SoyBaseE_val: 1.00E-119ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006913GO-bp Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport SoyBaseN/AISS
GO:0009220GO-bp Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
KOG0116 KOG RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains JGI ISS
PTHR10693Panther RNA-BINDING RAS-GAP SH3 BINDING PROTEIN RELATED JGI ISS
PTHR10693:SF8Panther NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / JGI ISS
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI ISS
PF02136PFAM Nuclear transport factor 2 (NTF2) domain JGI ISS
UniRef100_G7KXF8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ras GTPase-activating protein-binding protein n=1 Tax=Medicago truncatula RepID=G7KXF8_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233F017UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F017 related cluster n=1 Tax=unknown RepID=UPI000233F017 SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g35151
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g35151 not represented in the dataset
Glyma19g35151 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35151
ParalogEvidenceComments
Glyma03g32420 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35151 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g168200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g35151
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g35151
>Glyma19g35151.1   sequence type=CDS   gene model=Glyma19g35151   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTCTTCGTATCCCGGTTCCGTTAGTGCCGCACAGGTTGGTTCCTACTTCGTGGGACAGTACTACCAGATTCTTCGCCAGCAACCGAATCTCGTTCACCAGTTCTACTCCGATTCCAGCAGCATGATTCGCGTTGACGGAGACTCCGTTGAAACCGCGCACGATGTGTTGCAAATTCATTCAATTGTCTCGTTACTGAATTTTACTACAATTGAGATCAAGACAATCAATTCTCTTGACTCTTGGGATGGAGGTGTGCTTGTGATGGCCTCAGGTTTTGTGAAGATAAAGGATATCGGTGGGAAGCGGAAGTTTGTTCAAACTTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTAATGAATGATATGTTTCATTTCATTGATGATGGAGTAATGTACCCAAATCTGGTACCAGTGGCATCCGAAACGATTGACACACAACCACATCTTTCTGCTTCTCTTGCTGAGCCACCAGTTTCAGACTACGGCTTAGAGGAAGAAGCCAGGGAATATGCCAACTCAGTTCATATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACAAGAAGAACTTGAAACCGAAATTGTGGTGGAGGAAACTTCCGTACAGGAGGCATCTCCACCAATTCATACCGTTGCACACACTATCCAAGAACCCCCTGTTGCTCTTGTGGAAGAGTCCTTTGAGGAGCCTCCTAAGAAAACATATGCATCTATTTTACGAGTTTCCAAAGGGCTGCCAGTGTTGTCAGCTGCTCCAAAGCATGCTCCACATTCTTTCAAAAGTGCTCCACCTCCTCCAGAGTTGAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCATCTATGTATGCTCCCGAGTCAGGGACCGAGGCAGCAGAAGAAGGCTATGCACTAGAAGAAGATGAAGTAACATCTGTCTATGTTAGAAACTTGCCTGCTAATGTTACTGAAGTGGAGATTGACCAAGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTCTGCTATGCATTTGTTGAATTTGAAGACATTATTGGTGTTCAAAATGCACTTCAGTCTTCTCCACTCCAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGTCGGTGCAGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGCTATCAAGCAGATGCTCCGAGAGGGCGTTTTGGTGGTAGGAGCATGGGAAGGGGAGGTTATCAGGATGGTTCAGACTACACCAGACTAAGAGGTGATGGTTATCTTCAGCGTGGTTCACGATGA
Predicted protein sequences of Glyma19g35151
>Glyma19g35151.1   sequence type=predicted peptide   gene model=Glyma19g35151   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSYPGSVSAAQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDSVETAHDVLQIHSIVSLLNFTTIEIKTINSLDSWDGGVLVMASGFVKIKDIGGKRKFVQTFFLAPQEKGYFVMNDMFHFIDDGVMYPNLVPVASETIDTQPHLSASLAEPPVSDYGLEEEAREYANSVHIDDDPVDKYSLPEHQQQLQEELETEIVVEETSVQEASPPIHTVAHTIQEPPVALVEESFEEPPKKTYASILRVSKGLPVLSAAPKHAPHSFKSAPPPPELNHVAQPAVQQSSSASMYAPESGTEAAEEGYALEEDEVTSVYVRNLPANVTEVEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQSSPLQLAGRQVYIEERRPNSVGAARGGRRGRGRGSYQADAPRGRFGGRSMGRGGYQDGSDYTRLRGDGYLQRGSR*






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