Glyma19g35130 - SoyBase

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Report for Sequence Feature Glyma19g35130

Feature Type:	gene_model
Chromosome:	Gm19
Start:	42688105
stop:	42690289
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43980	AT	Annotation by Michelle Graham. TAIR10: plasmodesmata-located protein 1 \| chr5:17694817-17696458 REVERSE LENGTH=303	SoyBase	E_val: 4.00E-87	ISS
GO:0010497	GO-bp	Annotation by Michelle Graham. GO Biological Process: plasmodesmata-mediated intercellular transport	SoyBase	N/A	ISS
GO:0046739	GO-bp	Annotation by Michelle Graham. GO Biological Process: spread of virus in multicellular host	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
PTHR11795	Panther	PROTEIN KINASE	JGI		ISS
PTHR11795:SF83	Panther	RECEPTOR SERINE/THREONINE PROTEIN KINASE-RELATED	JGI		ISS
PF01657	PFAM	Domain of unknown function DUF26	JGI		ISS
UniRef100_G7KXF5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cysteine-rich repeat secretory protein n=1 Tax=Medicago truncatula RepID=G7KXF5_MEDTR	SoyBase	E_val: 4.00E-130	ISS
UniRef100_I1N9U4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9U4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g35130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35130

Paralog	Evidence	Comments
Glyma03g32400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g168000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g35130

Limit To All Plant Sequences

>Glyma19g35130.1   sequence type=CDS   gene model=Glyma19g35130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTATACTAAAAGTAAAACACCACATTCCCACGCTCCTCTTTCTCAGTATTTCATTTCCTCTGTTTCTTCTTACACCTACCTCCTCAGACAACACAAACTTGATCTACAAAGGTTGCGCCGACCAGAAACTCCAAGCCCAATACTCCCAGAACCTCAAACCGCTGTTGGACTCCCTAGTCTCGGCGTCGGCACAGAAGGGTTTCGCCGCGACTACCCAAAACGCGCTCACCGGCGCGTACCAATGCAGGGGAGACCTCTCCAACTCCGACTGCTACACCTGCGTGAGCAAGATTCCGGGGATGGTGAAGCGCCTCTGCGGCGGAGATGACGTGGCGGCGGCGCGGGTCCAGCTGAGCGGGTGCTACCTGCGGTACGAGGTGGTCGGGTTCAAGGTGGTCTCCGCGACGCAGCTGCTGTACAAGGTGTGCGGGGCCCGCAAGGTGGTCGACGGCGGGGGGTTCGAGGCGAGGAGGGACGCGGCGTTTGGGATGGCGGAGAACGGCGTGCAGAGCAGCGGAAATTTGTTCTACACGGGGAGCTACCAGAGTCTCTATGTGTTGGGACAGTGCGAGGGTAGTTTGGGAAATGAGGATTGTGGAGGTTGTATCAAGAGTGGTGCGGAACAGGCTAGGGATCAGTGTGGTGACTCTATCTCAGCGCAGGTTTATCTCCAGAGTTGTTTTCTTAGTTATAGCTTTTACCCCAATGGTGTTCCCACCGCCTCATCGTCTTCCTCAGGGGGAGGAGGGGGGCATCCACACACTGAGAGGACAGTGGCACTTGCGGTGGGAGGGGTGGCGGCTCTTGGATTCTTGATTGTTTGTTTGTTATTTCTCAAGTCGGTGTTGAAGAGAAGAGGTGGGAAGCGTTGA

Predicted protein sequences of Glyma19g35130

Limit To All Plant Sequences

>Glyma19g35130.1   sequence type=predicted peptide   gene model=Glyma19g35130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGILKVKHHIPTLLFLSISFPLFLLTPTSSDNTNLIYKGCADQKLQAQYSQNLKPLLDSLVSASAQKGFAATTQNALTGAYQCRGDLSNSDCYTCVSKIPGMVKRLCGGDDVAAARVQLSGCYLRYEVVGFKVVSATQLLYKVCGARKVVDGGGFEARRDAAFGMAENGVQSSGNLFYTGSYQSLYVLGQCEGSLGNEDCGGCIKSGAEQARDQCGDSISAQVYLQSCFLSYSFYPNGVPTASSSSSGGGGGHPHTERTVALAVGGVAALGFLIVCLLFLKSVLKRRGGKR*

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