SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G04040 | AT | Annotation by Michelle Graham. TAIR10: HAD superfamily, subfamily IIIB acid phosphatase | chr1:1042564-1043819 REVERSE LENGTH=271 | SoyBase | E_val: 2.00E-103 | ISS |
| GO:0000271 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0009932 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell tip growth | SoyBase | N/A | ISS |
| GO:0010817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels | SoyBase | N/A | ISS |
| GO:0016049 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell growth | SoyBase | N/A | ISS |
| GO:0030243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003993 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acid phosphatase activity | SoyBase | N/A | ISS |
| PTHR11726 | Panther | 60S RIBOSOMAL PROTEIN L10 | JGI | ISS | |
| PTHR11726:SF1 | Panther | 50S RIBOSOMAL PROTEIN L10E | JGI | ISS | |
| PF03767 | PFAM | HAD superfamily, subfamily IIIB (Acid phosphatase) | JGI | ISS | |
| UniRef100_B9SKN9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Acid phosphatase 1, putative n=1 Tax=Ricinus communis RepID=B9SKN9_RICCO | SoyBase | E_val: 3.00E-120 | ISS |
| UniRef100_I1N9U0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9U0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g35090 not represented in the dataset |
Glyma19g35090 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g32360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g167600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g35090.1 sequence type=CDS gene model=Glyma19g35090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAAATGTTTGGCACTCTCACTAATCATGGCAGGCCTCTTCATTGGCTTGGTGAGTCCACAATGGAACATATTGAACCCAAAATGGGGAAAAAGTGTTGAAGTAGTGAATCGTCCAGAATGGAACATCTTGAATCAAAGATTGAGAAAAGGGGTTGTTGGAGACAACTTGAAGAACTACTGCGAGAGTTGGAGGATAAATGTTGAACTAAACAACATTAGAGGGTTCAGTGTTGTGCCTCAAGAATGTGTGGACCATGTGAAGAAGTACATGACTTCATCTCAATACAATGTTGATTCTGTGAGGGCAGTGGAGGAGATTAGGCTCTACATGAGTGGATTCTGCACTTTAAAAGATGATGGCAAAGATTCCTGGATTTTTGATATTGATGAGACCCTTTTGTCCACAATTCCTTATTATAAGAAGCATGGTTTTGGGGGAGAAAAGCTGAACGTAACATCTTTAGAAGAATGGATGAAGAAAAGCAAGGCACCAGCTCTTGATCACACACTCGAGCTCTTCCATGAAATCAAGAACAAAGGGTTCAAAATCTTTCTGATTTCTTCAAGAAAGGAAAACCTAAGATCTCCCACCGTAGACAACCTTGTGAGTGTTGGATACCATGGATGGACTAGGCTTACATTGAGGGGTTTTGATGATGAATTGGTGGAAGTGAAAAAATACCATTCCATGGTGAGGCAACAATTGGTTGATGAAGGTTACAACATATGGGGTATTGTGGGAGATCAATGGAGCACTTTTGATGGACTTCCAATGGCCAAGAGAACATTCAAACTACCCAACTCCATTTACTATAAAGCATAA
>Glyma19g35090.1 sequence type=predicted peptide gene model=Glyma19g35090 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKCLALSLIMAGLFIGLVSPQWNILNPKWGKSVEVVNRPEWNILNQRLRKGVVGDNLKNYCESWRINVELNNIRGFSVVPQECVDHVKKYMTSSQYNVDSVRAVEEIRLYMSGFCTLKDDGKDSWIFDIDETLLSTIPYYKKHGFGGEKLNVTSLEEWMKKSKAPALDHTLELFHEIKNKGFKIFLISSRKENLRSPTVDNLVSVGYHGWTRLTLRGFDDELVEVKKYHSMVRQQLVDEGYNIWGIVGDQWSTFDGLPMAKRTFKLPNSIYYKA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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