Glyma19g35030 - SoyBase

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Report for Sequence Feature Glyma19g35030

Feature Type:	gene_model
Chromosome:	Gm19
Start:	42614946
stop:	42618206
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G46050	AT	Annotation by Michelle Graham. TAIR10: peptide transporter 3 \| chr5:18675062-18679071 REVERSE LENGTH=582	SoyBase	E_val: 0	ISS
GO:0006857	GO-bp	Annotation by Michelle Graham. GO Biological Process: oligopeptide transport	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009751	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0042938	GO-bp	Annotation by Michelle Graham. GO Biological Process: dipeptide transport	SoyBase	N/A	ISS
GO:0042939	GO-bp	Annotation by Michelle Graham. GO Biological Process: tripeptide transport	SoyBase	N/A	ISS
GO:0043201	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to leucine	SoyBase	N/A	ISS
GO:0080052	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to histidine	SoyBase	N/A	ISS
GO:0080053	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to phenylalanine	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0042937	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tripeptide transporter activity	SoyBase	N/A	ISS
KOG1237	KOG	H+/oligopeptide symporter	JGI		ISS
PTHR11654	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PTHR11654:SF37	Panther	OLIGOPEPTIDE TRANSPORTER-RELATED	JGI		ISS
PF00854	PFAM	POT family	JGI		ISS
UniRef100_G7KXD6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptide transporter PTR3-A n=1 Tax=Medicago truncatula RepID=G7KXD6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F2D8	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F2D8 related cluster n=1 Tax=unknown RepID=UPI000233F2D8	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g35030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g35030 not represented in the dataset	Glyma19g35030 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma19g35030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g167100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g35030

Limit To All Plant Sequences

>Glyma19g35030.2   sequence type=CDS   gene model=Glyma19g35030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGTGGTAGAAGAAAAGGGCCTTGCAAGTGGAAGAGAGGATTACACCCAAGATGGCACAGTGGACCTCAAAGGTAGACCCGTTTTAAGATCAAATACTGGAAGATGGAGAGCTTGTTCCTTCATAGTAGCATCAAACCTAGTGCAGTATCTAACAAAGAAGCTCCACGAGGGCACTGTGACATCTTCAAACAACGTTACCAACTGGTCTGGTACAGTGTGGATTATGCCAGTTGCTGGGGCTTACATAGCCGATGCCTATCTTGGCCGTTATTGGACCTTTGTTACAGCATCAACTATTTACCTTCTGGGAACGTGTTTCTTGACTCAAGCAGTGTCACTAGCAGCATTGAGACAGCCACCATCATCGTCGTTGCAAGTGGGAATTTTCTTCTTTGCCTTGTACATCATTGCAGCAGGCACAGGGGGAACCAAGCCCAACATTACTACAATGGGAGCTGACCAATTTGATGGCTTTGAGCCCAAGGAGAGGCTTTCCTTCTTCAACTGGTGGGTGTTTAATATTCTAATTGGAACCATGACCGCCCAAACTCTCTTGGTTTACATACAAGACAAGGTTGGTTTTGGACTTGGTTATGGGATCCCAACCATTGGGCTAGTCGTTTCAGTTTTGGTGTTTCTTTTAGGAACTCCACTTTATAGGCATAGATTGCCATCAGGTAGCCCCTTTACAAGGATGGTTCAGGTTTTTGTGGCTGCTATGAGGAAGTGGAAGACAGGCCAAAAATCACCATGGATGCTTTGCATTGTGACTCAAGTTGAGGAAACCAACCAAATGATGAAAATGGTTCCGGTTTTGATTACTACATGCATTCCAAGCATCATCATAGCTCAAACCACCACACTCTTTATCAGACAAGGCACCACACTGGACAGGAGAATGGGACCCCATTTTGAAATCCCTCCAGCATGTCTCATAGCACTTGTAAGCATCTTCTTGCTGACAAGCGTTGTGATCTATGACCGCCTTTTCGTTCCTGCGATCCAGCGCTACACAAAGAACCCCAGAGGGATCTCCTTGCTGCAGAGACTTGGAATTGGCCTTGTGCTACATGTTATTGTAATGCTCACTGCATGCTTTGTTGAGAGAAAGAGACTCAGTGTTGCTAGACAAAAACACCTCTTAGATCAGGACGATACAATTCCTCTTACTATTTTCATCCTCCTCCTTCAGTTTGCTTTGACAGCTGATACCTTTGTTGATGTTGCCAAGTTGGAGTTCTTCTATGATCAAGCACCAGAAGCCATTAAAAGCTTGGGAACATCATATTGCACAACCACCATAAGCATTGGAAATTTTCTTAATAGTTTTCTTCTTTCAACTGTTGCTGATCTCACCCTTAGACATGCTCATAAGGATTATTATTATGCATTCTTGGCCGCGCTGAGCGCTATCGATTTACTTTGCTTTGTGGTAATTGCCATGTTATATGTCTACAATGATGATGTAACACAAACCAAAATGGAGTTGGATATGAACCATGCTTCATCTAAGGACAAAACTGAAATAAGCCAAAGTACTCCACAACCAGATGCCAAGTCCTAG

Predicted protein sequences of Glyma19g35030

Limit To All Plant Sequences

>Glyma19g35030.2   sequence type=predicted peptide   gene model=Glyma19g35030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVVEEKGLASGREDYTQDGTVDLKGRPVLRSNTGRWRACSFIVASNLVQYLTKKLHEGTVTSSNNVTNWSGTVWIMPVAGAYIADAYLGRYWTFVTASTIYLLGTCFLTQAVSLAALRQPPSSSLQVGIFFFALYIIAAGTGGTKPNITTMGADQFDGFEPKERLSFFNWWVFNILIGTMTAQTLLVYIQDKVGFGLGYGIPTIGLVVSVLVFLLGTPLYRHRLPSGSPFTRMVQVFVAAMRKWKTGQKSPWMLCIVTQVEETNQMMKMVPVLITTCIPSIIIAQTTTLFIRQGTTLDRRMGPHFEIPPACLIALVSIFLLTSVVIYDRLFVPAIQRYTKNPRGISLLQRLGIGLVLHVIVMLTACFVERKRLSVARQKHLLDQDDTIPLTIFILLLQFALTADTFVDVAKLEFFYDQAPEAIKSLGTSYCTTTISIGNFLNSFLLSTVADLTLRHAHKDYYYAFLAALSAIDLLCFVVIAMLYVYNDDVTQTKMELDMNHASSKDKTEISQSTPQPDAKS*

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