Glyma19g35000 - SoyBase

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Report for Sequence Feature Glyma19g35000

Feature Type:	gene_model
Chromosome:	Gm19
Start:	42586842
stop:	42599346
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g35000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04010	AT	Annotation by Michelle Graham. TAIR10: phospholipid sterol acyl transferase 1 \| chr1:1031703-1036128 REVERSE LENGTH=633	SoyBase	E_val: 0	ISS
GO:0006629	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid metabolic process	SoyBase	N/A	ISS
GO:0010150	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf senescence	SoyBase	N/A	ISS
GO:0016127	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol catabolic process	SoyBase	N/A	ISS
GO:0034434	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol esterification	SoyBase	N/A	ISS
GO:0043231	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular membrane-bounded organelle	SoyBase	N/A	ISS
GO:0004607	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylcholine-sterol O-acyltransferase activity	SoyBase	N/A	ISS
GO:0008374	GO-mf	Annotation by Michelle Graham. GO Molecular Function: O-acyltransferase activity	SoyBase	N/A	ISS
GO:0080095	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidylethanolamine-sterol O-acyltransferase activity	SoyBase	N/A	ISS
GO:0080096	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatidate-sterol O-acyltransferase activity	SoyBase	N/A	ISS
KOG2369	KOG	Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase	JGI		ISS
PTHR11440	Panther	LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED	JGI		ISS
PTHR11440:SF7	Panther	gb def: F21M11.5 protein	JGI		ISS
PF02450	PFAM	Lecithin:cholesterol acyltransferase	JGI		ISS
UniRef100_Q8GZM5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lecithine cholesterol acyltransferase-like protein n=1 Tax=Medicago truncatula RepID=Q8GZM5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233F2D6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F2D6 related cluster n=1 Tax=unknown RepID=UPI000233F2D6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g35000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g35000

Paralog	Evidence	Comments
Glyma03g32251	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g35000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g166800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g35000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g35000

Limit To All Plant Sequences

>Glyma19g35000.2   sequence type=transcript   gene model=Glyma19g35000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAAAATGGTAAAAGTTCAGAAGAGGCCAGTAAAGTATAAGCAGAAAAGGGCCCGTCAGCTGGGATACAATTCAATTCAACGTTCAAAGGTCAAAAACCATTTCCGATTGGAATTTTCATTTATTCGCACACTCCCCAACTACCGGATGGTCAGAGTCACGTTTTTTTCATTCTTCCCTCCATCCCTCTCCCTCACAATGGCGAAAAACCCGTTACTCTGCTCGATCGTCCTCCTCGCCGTGCTCGCCGGAGCCACCTCAGACGACGGCGCCGAGCTCGACTACTCGAAGCTCTCCGGCATTATAATCCCCGGCTTCGCGTCCACTCAGCTCCGAGCATGGTCCATTCTCGACTGTCCTTACTCTCCGCTCGATTTCAACCCTCTCGACTTGGTCTGGCTCGACACAACCAAACTTCTTTCTGCTGTCAATTGCTGGCTTAAGTGCATGGTGTTGGATCCTTACAACCAGACAGATCATCCTGATTGCAAGTCCCGTCCGGATAGTGGTCTTTCTGGCATTACAGAACTTGATCCAGGTTATATAACAGGACCTCTTTCATCAGTTTGGAAAGAATGGATTAAGTGGTGTATTGAATTTGGCATAGAAGCTAATGCAATAATTGCTGTTCCGTATGATTGGAGATTGTCGCCCTCCAAGCTTGAAGAGCGGGACCTTTACTTTCATAAGCTAAAAATAACATTTGAAACTGCTTACAAACTTCGTGGTGGCCCCTCTTTAGTTTTTGCCCATTCATTGGGTAATCATGTTTTCCGTTATTTCTTGGAGTGGTTGAAGCTAGAGATTGCACCAAAACATTATATCCAGTGGCTGGATCAACATATTCATGCCTATTTTGCTGTTGGAGCTCCCCTTCTTGGTGCAATGGAAACCATTGAAGCAACACTTACTGGATTCACATTTGGTCTTCCTATATCTGAGGGAACAGCTCGGATGATGTTCAACTCCTTTGGTTCATCATTATGGATGATGCCTTTTTCCAAGTACTGTAGAACAGATAATAAATATTGGAAGCATTTTTCTGGGGGAAGGCAAGTGGGTCCACCAACATATCACTGTGATGAGCAGGAGTTTAAGACAAACTTATCTGGGTGGCCAACAAAAATAATCAACATTGAAATTCCCTCAACTCGTGCATTTGATGCATATCCTTCATTCTCAGAAATACCTGAGGCCAACTTGTCCAGCATGGAGTGCGGACTACCTACTCAATTATCTTTCTCAGCTCGGGAAATATCAGATGGCACCTTTTTCAAGGCAATTGAAGATTATGACCCAGACAGCAAGAGGCTCTTGTACCTGTTAGAGAAATCATATCTTGGCAATCCTGTTCTTAATCCCCTTACACCTTGGGACCGGCCACCAATAAAAAATGTATTCTGCATTTATGGGACTGATTCAAAGACAAAGGTTGGTTACTACTATGCTCCTAGCGGCAAGCCTTACCCTGATAACTGGATCATTACGGATGTCGTTTATGAGTTTGAAGGATCTCTAATCTCAAGGTCAGGGAATCTGGTTGAAGGGAACCCTGGAGCAATAAGTGGCGATGAGACGGTGCCATATCTCTCCCTTTCCTGGTGCAAAAACTGGCTTGGACCGAAAGTGAACATAACAAAAGCTCCACAGTCAGAGCATGATGGCTCAGATGTACAAATTAAATTGAATGTGGAACATCACCATGAAGAAGATATCGTTCCAAACATGACAAGATCACCAAGGGTGAAGTATATAACATATTATGAAGATTCTGAAAGTCTTCCTGGAAAGAGGACAGCAGTTTGGGAGCTTGATAAAGCAAATCACAGGAACATCGTTAGATCACCAGTGCTAATGAGGGAATTATGGCTTGAGATGTGGCATGATATCCATCCTGATGCAAAATCAAAGTTTGTAAAAAAAGCTAAGCGTGGTCCTTTAAGAGATGAGGACTGTTATTGGGATTATGGGAAAGCTCGTTGTGCATGGCCTGAGTACTGTGAATATAGGTATGTTTTTGGTGATGTTCACTTGGGACAAAGCTGCAGGTTGAGATATACTACAGCTGAATTGTTGTCGCATTATTTGTAAATAATAAGGATGACACGCTACATATGAATACCAGAATTACTCCTTCATACAACCATGACTTTTGGAGTTTGGCCATTCTTTGACATTGTATACTTGTGGGGGCACTGTATACAAGCAAATATTTTGTTTGCTGGTTTAGAAATTTGACTCAACTTCTGAACTCGTCTATTATCCACTTCACAATTTGCACGGTATTTCTTGGGCCAGATCGTAATCAATGTTGTACTATACTCTGTTACTAGCAGCGGACACTTCTCACCGATATATTTACTGGTGGCATCTGATATGCGTCTTCATATGCTCTGGAAAACGAATTTCAGGTTATTTGCCTTCTATTTGTTCAAACATGATTTGTACTGCTATTCTTGGTTAACCAAGTGATCACTTCCCACTTTGCCATCCATGATAAGTAATTGGCGAGAATTATGATGGATCTGTAGAGCTATATTGTTCAATTGGTTGATAGTTTTCATGATCTAGAAACATACAGGCTATAGTGATATACTGATATGCTAAATCCATTGTTAGAAAAAGTTGACATGGGAAGGGAGAATACAAATAGTGTAGATGACAGTAGTACGAAGCTGAAAACTTTTGTTCTCTGATTTCGTAACAATTACATTCTTTCTCTACATTTGCCAATGTCAACTACTTATCTCTTTACTTTAGATTGACACCATAAATATGTGATTAAACTTAAACCTCTGTCCGTTTAAGATGTATGATTCGAAAATTGATGATTATGTCTTAATGGTTCAGTTTGATGTACCCTTCCCAGGAACGGCTAAACAATTTTGTAACGTTTTGATAAGCTCGTTTGTGAATAAGATTGTTT

Coding sequences of Glyma19g35000

Limit To All Plant Sequences

>Glyma19g35000.1   sequence type=CDS   gene model=Glyma19g35000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAAAGTTCAGAAGAGGCCAGTAAAGTATAAGCAGAAAAGGGCCCGTCAGCTGGGATACAATTCAATTCAACGTTCAAAGGTCAAAAACCATTTCCGATTGGAATTTTCATTTATTCGCACACTCCCCAACTACCGGATGGTCAGAGTCACGTTTTTTTCATTCTTCCCTCCATCCCTCTCCCTCACAATGGCGAAAAACCCGTTACTCTGCTCGATCGTCCTCCTCGCCGTGCTCGCCGGAGCCACCTCAGACGACGGCGCCGAGCTCGACTACTCGAAGCTCTCCGGCATTATAATCCCCGGCTTCGCGTCCACTCAGCTCCGAGCATGGTCCATTCTCGACTGTCCTTACTCTCCGCTCGATTTCAACCCTCTCGACTTGGTCTGGCTCGACACAACCAAACTTCTTTCTGCTGTCAATTGCTGGCTTAAGTGCATGGTGTTGGATCCTTACAACCAGACAGATCATCCTGATTGCAAGTCCCGTCCGGATAGTGGTCTTTCTGGCATTACAGAACTTGATCCAGGTTATATAACAGGACCTCTTTCATCAGTTTGGAAAGAATGGATTAAGTGGTGTATTGAATTTGGCATAGAAGCTAATGCAATAATTGCTGTTCCGTATGATTGGAGATTGTCGCCCTCCAAGCTTGAAGAGCGGGACCTTTACTTTCATAAGCTAAAAATAACATTTGAAACTGCTTACAAACTTCGTGGTGGCCCCTCTTTAGTTTTTGCCCATTCATTGGGTAATCATGTTTTCCGTTATTTCTTGGAGTGGTTGAAGCTAGAGATTGCACCAAAACATTATATCCAGTGGCTGGATCAACATATTCATGCCTATTTTGCTGTTGGAGCTCCCCTTCTTGGTGCAATGGAAACCATTGAAGCAACACTTACTGGATTCACATTTGGTCTTCCTATATCTGAGGGAACAGCTCGGATGATGTTCAACTCCTTTGGTTCATCATTATGGATGATGCCTTTTTCCAAGTACTGTAGAACAGATAATAAATATTGGAAGCATTTTTCTGGGGGAAGGCAAGTGGGTCCACCAACATATCACTGTGATGAGCAGGAGTTTAAGACAAACTTATCTGGGTGGCCAACAAAAATAATCAACATTGAAATTCCCTCAACTCGTGAAATACCTGAGGCCAACTTGTCCAGCATGGAGTGCGGACTACCTACTCAATTATCTTTCTCAGCTCGGGAAATATCAGATGGCACCTTTTTCAAGGCAATTGAAGATTATGACCCAGACAGCAAGAGGCTCTTGTACCTGTTAGAGAAATCATATCTTGGCAATCCTGTTCTTAATCCCCTTACACCTTGGGACCGGCCACCAATAAAAAATGTATTCTGCATTTATGGGACTGATTCAAAGACAAAGGTTGGTTACTACTATGCTCCTAGCGGCAAGCCTTACCCTGATAACTGGATCATTACGGATGTCGTTTATGAGTTTGAAGGATCTCTAATCTCAAGGTCAGGGAATCTGGTTGAAGGGAACCCTGGAGCAATAAGTGGCGATGAGACGGTGCCATATCTCTCCCTTTCCTGGTGCAAAAACTGGCTTGGACCGAAAGTGAACATAACAAAAGCTCCACAGTCAGAGCATGATGGCTCAGATGTACAAATTAAATTGAATGTGGAACATCACCATGAAGAAGATATCGTTCCAAACATGACAAGATCACCAAGGGTGAAGTATATAACATATTATGAAGATTCTGAAAGTCTTCCTGGAAAGAGGACAGCAGTTTGGGAGCTTGATAAAGCAAATCACAGGAACATCGTTAGATCACCAGTGCTAATGAGGGAATTATGGCTTGAGATGTGGCATGATATCCATCCTGATGCAAAATCAAAGTTTGTAAAAAAAGCTAAGCGTGGTCCTTTAAGAGATGAGGACTGTTATTGGGATTATGGGAAAGCTCGTTGTGCATGGCCTGAGTACTGTGAATATAGGTATGTTTTTGGTGATGTTCACTTGGGACAAAGCTGCAGGTTGAGATATACTACAGCTGAATTGTTGTCGCATTATTTGTAA

>Glyma19g35000.2   sequence type=CDS   gene model=Glyma19g35000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTAAAAGTTCAGAAGAGGCCAGTAAAGTATAAGCAGAAAAGGGCCCGTCAGCTGGGATACAATTCAATTCAACGTTCAAAGGTCAAAAACCATTTCCGATTGGAATTTTCATTTATTCGCACACTCCCCAACTACCGGATGGTCAGAGTCACGTTTTTTTCATTCTTCCCTCCATCCCTCTCCCTCACAATGGCGAAAAACCCGTTACTCTGCTCGATCGTCCTCCTCGCCGTGCTCGCCGGAGCCACCTCAGACGACGGCGCCGAGCTCGACTACTCGAAGCTCTCCGGCATTATAATCCCCGGCTTCGCGTCCACTCAGCTCCGAGCATGGTCCATTCTCGACTGTCCTTACTCTCCGCTCGATTTCAACCCTCTCGACTTGGTCTGGCTCGACACAACCAAACTTCTTTCTGCTGTCAATTGCTGGCTTAAGTGCATGGTGTTGGATCCTTACAACCAGACAGATCATCCTGATTGCAAGTCCCGTCCGGATAGTGGTCTTTCTGGCATTACAGAACTTGATCCAGGTTATATAACAGGACCTCTTTCATCAGTTTGGAAAGAATGGATTAAGTGGTGTATTGAATTTGGCATAGAAGCTAATGCAATAATTGCTGTTCCGTATGATTGGAGATTGTCGCCCTCCAAGCTTGAAGAGCGGGACCTTTACTTTCATAAGCTAAAAATAACATTTGAAACTGCTTACAAACTTCGTGGTGGCCCCTCTTTAGTTTTTGCCCATTCATTGGGTAATCATGTTTTCCGTTATTTCTTGGAGTGGTTGAAGCTAGAGATTGCACCAAAACATTATATCCAGTGGCTGGATCAACATATTCATGCCTATTTTGCTGTTGGAGCTCCCCTTCTTGGTGCAATGGAAACCATTGAAGCAACACTTACTGGATTCACATTTGGTCTTCCTATATCTGAGGGAACAGCTCGGATGATGTTCAACTCCTTTGGTTCATCATTATGGATGATGCCTTTTTCCAAGTACTGTAGAACAGATAATAAATATTGGAAGCATTTTTCTGGGGGAAGGCAAGTGGGTCCACCAACATATCACTGTGATGAGCAGGAGTTTAAGACAAACTTATCTGGGTGGCCAACAAAAATAATCAACATTGAAATTCCCTCAACTCGTGCATTTGATGCATATCCTTCATTCTCAGAAATACCTGAGGCCAACTTGTCCAGCATGGAGTGCGGACTACCTACTCAATTATCTTTCTCAGCTCGGGAAATATCAGATGGCACCTTTTTCAAGGCAATTGAAGATTATGACCCAGACAGCAAGAGGCTCTTGTACCTGTTAGAGAAATCATATCTTGGCAATCCTGTTCTTAATCCCCTTACACCTTGGGACCGGCCACCAATAAAAAATGTATTCTGCATTTATGGGACTGATTCAAAGACAAAGGTTGGTTACTACTATGCTCCTAGCGGCAAGCCTTACCCTGATAACTGGATCATTACGGATGTCGTTTATGAGTTTGAAGGATCTCTAATCTCAAGGTCAGGGAATCTGGTTGAAGGGAACCCTGGAGCAATAAGTGGCGATGAGACGGTGCCATATCTCTCCCTTTCCTGGTGCAAAAACTGGCTTGGACCGAAAGTGAACATAACAAAAGCTCCACAGTCAGAGCATGATGGCTCAGATGTACAAATTAAATTGAATGTGGAACATCACCATGAAGAAGATATCGTTCCAAACATGACAAGATCACCAAGGGTGAAGTATATAACATATTATGAAGATTCTGAAAGTCTTCCTGGAAAGAGGACAGCAGTTTGGGAGCTTGATAAAGCAAATCACAGGAACATCGTTAGATCACCAGTGCTAATGAGGGAATTATGGCTTGAGATGTGGCATGATATCCATCCTGATGCAAAATCAAAGTTTGTAAAAAAAGCTAAGCGTGGTCCTTTAAGAGATGAGGACTGTTATTGGGATTATGGGAAAGCTCGTTGTGCATGGCCTGAGTACTGTGAATATAGGTATGTTTTTGGTGATGTTCACTTGGGACAAAGCTGCAGGTTGAGATATACTACAGCTGAATTGTTGTCGCATTATTTGTAA

Predicted protein sequences of Glyma19g35000

Limit To All Plant Sequences

>Glyma19g35000.1   sequence type=predicted peptide   gene model=Glyma19g35000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKVQKRPVKYKQKRARQLGYNSIQRSKVKNHFRLEFSFIRTLPNYRMVRVTFFSFFPPSLSLTMAKNPLLCSIVLLAVLAGATSDDGAELDYSKLSGIIIPGFASTQLRAWSILDCPYSPLDFNPLDLVWLDTTKLLSAVNCWLKCMVLDPYNQTDHPDCKSRPDSGLSGITELDPGYITGPLSSVWKEWIKWCIEFGIEANAIIAVPYDWRLSPSKLEERDLYFHKLKITFETAYKLRGGPSLVFAHSLGNHVFRYFLEWLKLEIAPKHYIQWLDQHIHAYFAVGAPLLGAMETIEATLTGFTFGLPISEGTARMMFNSFGSSLWMMPFSKYCRTDNKYWKHFSGGRQVGPPTYHCDEQEFKTNLSGWPTKIINIEIPSTREIPEANLSSMECGLPTQLSFSAREISDGTFFKAIEDYDPDSKRLLYLLEKSYLGNPVLNPLTPWDRPPIKNVFCIYGTDSKTKVGYYYAPSGKPYPDNWIITDVVYEFEGSLISRSGNLVEGNPGAISGDETVPYLSLSWCKNWLGPKVNITKAPQSEHDGSDVQIKLNVEHHHEEDIVPNMTRSPRVKYITYYEDSESLPGKRTAVWELDKANHRNIVRSPVLMRELWLEMWHDIHPDAKSKFVKKAKRGPLRDEDCYWDYGKARCAWPEYCEYRYVFGDVHLGQSCRLRYTTAELLSHYL*

>Glyma19g35000.2   sequence type=predicted peptide   gene model=Glyma19g35000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKVQKRPVKYKQKRARQLGYNSIQRSKVKNHFRLEFSFIRTLPNYRMVRVTFFSFFPPSLSLTMAKNPLLCSIVLLAVLAGATSDDGAELDYSKLSGIIIPGFASTQLRAWSILDCPYSPLDFNPLDLVWLDTTKLLSAVNCWLKCMVLDPYNQTDHPDCKSRPDSGLSGITELDPGYITGPLSSVWKEWIKWCIEFGIEANAIIAVPYDWRLSPSKLEERDLYFHKLKITFETAYKLRGGPSLVFAHSLGNHVFRYFLEWLKLEIAPKHYIQWLDQHIHAYFAVGAPLLGAMETIEATLTGFTFGLPISEGTARMMFNSFGSSLWMMPFSKYCRTDNKYWKHFSGGRQVGPPTYHCDEQEFKTNLSGWPTKIINIEIPSTRAFDAYPSFSEIPEANLSSMECGLPTQLSFSAREISDGTFFKAIEDYDPDSKRLLYLLEKSYLGNPVLNPLTPWDRPPIKNVFCIYGTDSKTKVGYYYAPSGKPYPDNWIITDVVYEFEGSLISRSGNLVEGNPGAISGDETVPYLSLSWCKNWLGPKVNITKAPQSEHDGSDVQIKLNVEHHHEEDIVPNMTRSPRVKYITYYEDSESLPGKRTAVWELDKANHRNIVRSPVLMRELWLEMWHDIHPDAKSKFVKKAKRGPLRDEDCYWDYGKARCAWPEYCEYRYVFGDVHLGQSCRLRYTTAELLSHYL*

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