SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G07880 | AT | Annotation by Michelle Graham. TAIR10: Immunoglobulin E-set superfamily protein | chr3:2514175-2515544 FORWARD LENGTH=240 | SoyBase | E_val: 6.00E-59 | ISS |
| GO:0007015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin filament organization | SoyBase | N/A | ISS |
| GO:0009932 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell tip growth | SoyBase | N/A | ISS |
| GO:0010053 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root epidermal cell differentiation | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005094 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Rho GDP-dissociation inhibitor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG3205 | KOG | Rho GDP-dissociation inhibitor | JGI | ISS | |
| PTHR10980 | Panther | RHO GDP-DISSOCIATION INHIBITOR-RELATED | JGI | ISS | |
| PTHR10980:SF2 | Panther | RHO GUANINE DISSOCIATION INHIBITOR-RELATED | JGI | ISS | |
| PF02115 | PFAM | RHO protein GDP dissociation inhibitor | JGI | ISS | |
| UniRef100_Q705X4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Rho GDP dissociation inhibitor 1 n=1 Tax=Medicago truncatula RepID=Q705X4_MEDTR | SoyBase | E_val: 1.00E-115 | ISS |
| UniRef100_UPI00019AAA04 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00019AAA04 related cluster n=1 Tax=unknown RepID=UPI00019AAA04 | SoyBase | E_val: 9.00E-168 | ISS |
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Glyma19g34980 not represented in the dataset |
Glyma19g34980 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g166700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g34980.1 sequence type=CDS gene model=Glyma19g34980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAGTGGCGGTAATGGGAAGAGAGCACATGAAGAAGCGGGGCCTTCATCTGGGATTGATGGAAGGAAACTTGAAATGACTGAAAAAGCGAGTGATGATGATAAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGGAGCCATTGAAGATAGCAAAAATGGTTTTTTTGTTCCTGGGCCTCTTCTTTCTCTCAAGGAACAGATCGAACGGGACAAGGAGGACGAAAGCCTAAGGAGATGGAAAGAGAAGCTGTTGGGTTGCTTGGAAAGTGATATAGATGGTCAATTGGATCCTGAAGTGAAATTTCACTCCATAGGAATTCTCTCTGAGGATTTTGGTGAAATTGTCACTCCTCTACCTGTGGATGAAAATCGCAATGGCTGTACTCTATTTACTCTCAGGGAGGGGTCTCGCTATCAGCTTAAGCTAAAATTTAGTGTTCTGCACAACATTGTGTCTGGCTTGACATACTCCAACACTGTGTGGAAAGGAGGGCTTCAAGTTGATCAGAGCAAAGGAATGTTGGGTGCTTTTGCTCCTCAAAAGGAGCCATATGTATACGCCTTGAAGGAGGACACCACTCCTTCCGGTGCACTTGCAAGGGGTGTTTACTCAGCCAAACTTAAGTTTGAAGATGATGACAGAAGGTGTCACATGGAACTCAAATATTTATTCGAGATAAAAAAGAGAAGCTAG
>Glyma19g34980.1 sequence type=predicted peptide gene model=Glyma19g34980 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MESGGNGKRAHEEAGPSSGIDGRKLEMTEKASDDDKEEEEEEEEEEEGAIEDSKNGFFVPGPLLSLKEQIERDKEDESLRRWKEKLLGCLESDIDGQLDPEVKFHSIGILSEDFGEIVTPLPVDENRNGCTLFTLREGSRYQLKLKFSVLHNIVSGLTYSNTVWKGGLQVDQSKGMLGAFAPQKEPYVYALKEDTTPSGALARGVYSAKLKFEDDDRRCHMELKYLFEIKKRS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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