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Report for Sequence Feature Glyma19g34900

Feature Type:gene_model
Chromosome:Gm19
Start:42491481
stop:42501296
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g34900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G21150AT Annotation by Michelle Graham. TAIR10: ribophorin II (RPN2) family protein | chr4:11278646-11283599 FORWARD LENGTH=691 SoyBaseE_val: 0ISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0018279GO-bp Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation via asparagine SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005789GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0008250GO-cc Annotation by Michelle Graham. GO Cellular Compartment: oligosaccharyltransferase complex SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0004579GO-mf Annotation by Michelle Graham. GO Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity SoyBaseN/AISS
KOG2447 KOG Oligosaccharyltransferase, delta subunit (ribophorin II) JGI ISS
PTHR12640Panther RIBOPHORIN II JGI ISS
PF05817PFAM Oligosaccharyltransferase subunit Ribophorin II JGI ISS
UniRef100_B9SV32UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ribophorin II, putative n=1 Tax=Ricinus communis RepID=B9SV32_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI000233F00FUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F00F related cluster n=1 Tax=unknown RepID=UPI000233F00F SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g34900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g34900
ParalogEvidenceComments
Glyma03g32140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g34900 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g165800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g34900
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g34900
>Glyma19g34900.2   sequence type=CDS   gene model=Glyma19g34900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAGAAACATAGCAGGATTACTGGCGCTGCTTCTCGCTGTTTCGATCTGCGGAGCCGTCACGATTCCTGGTCCCGTCTCCGATGCTCACCGTTCCGCCGCGCTAGAGCTCTTCGATGGATCCTTTTCAAGTTTAGAAGAGGCCTATGAGGCCCTAAGAGTTTTTGAGATTCTTGGGATTGGGAATAAGCCTGATGTGAGCACAACCACTTGCAAGAAAGTAGCAGAAAACCTTGAGTTGTCATCGCCTGTGAAGGATTTGTTCTATTCGTTAAAGGTTAATGGCATATTAAAATGCAAGGTTGATGGGGATGTTTTCAAGGATATTGCTTTGAGACTTAAAGCCACTGTCAATGATGCAAGTACTTTGGTGGACATGTACTATTCAATAGGAAGTCTGGTTCTTATAAAGGACCAGGCTTCTGATGTTGATGTGCTTCTTACTGATGCTGATGGGACTTTCCATTCAATCAAGGCTCTGAGTCAAAGTGATGGAAGATGGCGTTATAGTTCTGATAATCCAGAATCTAGTACCTATGCTGCTGGATTAGCACTTGAAGCACTGGCTGGAGTGATCTCATTAGCATCTTCTGAAATTGATCAGTCTAGGGTGAATACAGTGAAAAATGATATATTGAAGCTTTTTGACAGCATTGAGAAATATGATGATGGAACCTTCTATTTTGATGAGAAATTTGTTGGTGGAAGTGAGCATCAGGGTTCTCTTTCCACAACTTCTTCTGTTGTTCAAGGGGTTACAGCATTTGCTGCTGTAACTTCTGGAAAAATAAATCTTCCAGGGGATAAAATATTGGGTTTGGCAAATTTTTTCCTGGGAATTGGAATCCCAGGAGATGCCAAGGACTTCTTCAATCAAGTTGAATCATTAGCTCTTCTAGAGAACAACAGGGTTTCCATCCCATTGGTACTGTCACTTCCTGCAACGGTTTATTCATTATCCAAAAAAGATCAGCTCAAGGTTAGGGTGAACACTGTACTTGGTTCAGCTGCACCACCTTTAACAGTTAAGCTTGTGCGAGCTTTCCGCTCTGATGCTAAAGATTCAGCTATTATTGAGAGCAAGGAGCTCCAATATGATCAAAATAATGGAATTCATGTCTTGGAAGCTTTCCCAAACAATGTGGATGTGGGAACTTATGCGTTTGTTTTTGAGATTGCACTTCATGATTCTGCTGGTGAAAAAGTTTATGCTACTGGAGGCCAAATTCATGTACCAATATATGTCACTGGCATTATCAAAGTCAGCAATGCGGAAATTGCTGTTCTTGACAGTGATCTTGGAAGTGTTGAAACCCAAAAAACGCTAGATTTGGCTGGAAATGATGTTGTTTCACTCTCAGCTAACCACTTGCAAAAGTTGCGCTTTTCTTTCCAATTGACAACACCTCATGATCATGCTTTTAAGCCTCTTCAGGCATTTTTCAAGTTGAAGCATGAGACAAAGCATGAACACATCTTTGTGGTTGGAAATACTGGCAAGAAGTTTGAGATTATTCTTGATTTTCTTGGTTTGGTGGAGAAATTTTATTACCTCTCAGGGAGATATGACATTGAGCTGACTGTCGGGGATGCTGTCATGGAGAACTCTTTCTTATGGCTGCTTGGTCAAGTTGATTTAGATCTTCCTGAAGCACCTGAGAAGGCAGCCCGTCTTCCTCCACTCCCTGTTGATCCTTACTCAAGATATGGGCCCAAAGCCGAGATAGCCCACTTATTCAGGGCTCCAGAAAAGCGACCACCCCAGGAACTCTCTCTTACTTTCTTGGGTTTGACCCTTCTGCCATTTATTGGCTTTTTGGTTGGGCTGTTACGCCTGGGAGTGAACTTGAAGAATTTTCCTTCTTCAGCAGTACCTGCTGCATATGCCATCTTATTCCAGCTTGGCATTGCCACTGTTCTATTGCTTTATGTACTTTTCTGGTTGAAGCTGGACTTGTTCACTACACTCAAAACTGTAGGATTTTTGGGAGCTTTTCTGTTGTTTGTGGGACACAGAATTCTTTCCCATCTCGCGTCAACATCATCCAAGTTGAAGTCTGCATAA
Predicted protein sequences of Glyma19g34900
>Glyma19g34900.2   sequence type=predicted peptide   gene model=Glyma19g34900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MARNIAGLLALLLAVSICGAVTIPGPVSDAHRSAALELFDGSFSSLEEAYEALRVFEILGIGNKPDVSTTTCKKVAENLELSSPVKDLFYSLKVNGILKCKVDGDVFKDIALRLKATVNDASTLVDMYYSIGSLVLIKDQASDVDVLLTDADGTFHSIKALSQSDGRWRYSSDNPESSTYAAGLALEALAGVISLASSEIDQSRVNTVKNDILKLFDSIEKYDDGTFYFDEKFVGGSEHQGSLSTTSSVVQGVTAFAAVTSGKINLPGDKILGLANFFLGIGIPGDAKDFFNQVESLALLENNRVSIPLVLSLPATVYSLSKKDQLKVRVNTVLGSAAPPLTVKLVRAFRSDAKDSAIIESKELQYDQNNGIHVLEAFPNNVDVGTYAFVFEIALHDSAGEKVYATGGQIHVPIYVTGIIKVSNAEIAVLDSDLGSVETQKTLDLAGNDVVSLSANHLQKLRFSFQLTTPHDHAFKPLQAFFKLKHETKHEHIFVVGNTGKKFEIILDFLGLVEKFYYLSGRYDIELTVGDAVMENSFLWLLGQVDLDLPEAPEKAARLPPLPVDPYSRYGPKAEIAHLFRAPEKRPPQELSLTFLGLTLLPFIGFLVGLLRLGVNLKNFPSSAVPAAYAILFQLGIATVLLLYVLFWLKLDLFTTLKTVGFLGAFLLFVGHRILSHLASTSSKLKSA*






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