Report for Sequence Feature Glyma19g34860
Feature Type: gene_model
Chromosome: Gm19
Start: 42432473
stop: 42434626
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g34860
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G54690 AT
Annotation by Michelle Graham. TAIR10: Sugar isomerase (SIS) family protein | chr3:20246586-20247810 FORWARD LENGTH=350
SoyBase E_val: 0 ISS
GO:0005975 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process
SoyBase N/A ISS
GO:0019243 GO-bp
Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate
SoyBase N/A ISS
GO:0016853 GO-mf
Annotation by Michelle Graham. GO Molecular Function: isomerase activity
SoyBase N/A ISS
GO:0030246 GO-mf
Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding
SoyBase N/A ISS
PTHR10937 Panther
GLUCOSAMINE-FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE
JGI ISS
PF00571 PFAM
CBS domain
JGI ISS
PF01380 PFAM
SIS domain
JGI ISS
UniRef100_B9T1C0 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Polysialic acid capsule expression protein kpsF, putative n=1 Tax=Ricinus communis RepID=B9T1C0_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1N9R7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9R7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g34860
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma19g34860 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g165400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g34860
Coding sequences of Glyma19g34860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g34860.1 sequence type=CDS gene model=Glyma19g34860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTTCTCTCCCTGTGCCCGCATTTCCATCCAAACACTGCCTTGACGAGAGCAGCCACATTGACGAAGCCACCCTCTCGGCGCTATTCAAGTCGCAGCAGAGCCACCTGAACTTCTTCTTCGACCACATCGACCACTCCCAAACCCTAGCCTTCACGCGCGCGCTCCTCAATGCCGCCGGCACCGTCTTCTTCACCGGCGTCGGAAAATCCGGCTTCGTCGCGCACAAGATCTCGCAGACGCTCGTCTCTCTGGGCGTTCGCTCCGCGTTCCTCTCGCCGGTGGACGCTCTCCACGGCGACATTGGAATCCTCACCAATCGCGATGTGCTCATCCTCCTCAGCAAGTCCGGCGCCACCGAGGAGCTCCTCCGCCTTGTGCCGTGTGCGAGGGCCAAAGGCGCGCTCCTCATCGCGCTCACCTCCGTTGAAGGCAACGCGCTCGCCGCGGCGTGCGACATGTCCGTGCATTTGCCGCTCCAGAGAGAGCTCTGTCCGTTCAACCTCGCGCCGGTGACATCCACCGCTATTCAAATGGTGTTCGGCGACACCGTCGCCATCGCGCTCATGGAGGCGAGGAATCTCACCAAGGAGGAGTACGCCGCGAACCATCCCGCCGGCAAGATCGGGAAGAGCCTCATCTTCAAGGTGAAGGATGTGATGAAGAAACAGGACGAGCTTCCAATTTGCAGAGAATCGGATTTGATTATGGATCAGCTCGTGGAACTCACAACTAAAGGATGCGGATGCCTCCTCGTTATCGGTGACGGTTACCGTCTGATCGGAACGTTCACCGACGGTGATCTCCGTCGTACTCTCCGAGCCAGCGGAGAAGCCATTTTCAAACTCACTGTTGGGCAAATGTGCAACAGGAATCCGAGAACTATTGGTCCGGAGGCAATGGCGGTGGATGCGATGAAGAAGATGGAGGCACCTCCATCGCCGGTTCAGTTTTTGCCTGTGATAAACGATGAAAGTATCTTGATTGGGATTGTGACCTTGCATGGTTTGGTTTCAGCTGGCTTGTGA
Predicted protein sequences of Glyma19g34860
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g34860.1 sequence type=predicted peptide gene model=Glyma19g34860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSLPVPAFPSKHCLDESSHIDEATLSALFKSQQSHLNFFFDHIDHSQTLAFTRALLNAAGTVFFTGVGKSGFVAHKISQTLVSLGVRSAFLSPVDALHGDIGILTNRDVLILLSKSGATEELLRLVPCARAKGALLIALTSVEGNALAAACDMSVHLPLQRELCPFNLAPVTSTAIQMVFGDTVAIALMEARNLTKEEYAANHPAGKIGKSLIFKVKDVMKKQDELPICRESDLIMDQLVELTTKGCGCLLVIGDGYRLIGTFTDGDLRRTLRASGEAIFKLTVGQMCNRNPRTIGPEAMAVDAMKKMEAPPSPVQFLPVINDESILIGIVTLHGLVSAGL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
