Glyma19g34780 - SoyBase

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Report for Sequence Feature Glyma19g34780

Feature Type:	gene_model
Chromosome:	Gm19
Start:	42366324
stop:	42369290
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g34780

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G44120	AT	Annotation by Michelle Graham. TAIR10: RmlC-like cupins superfamily protein \| chr5:17756460-17758246 REVERSE LENGTH=472	SoyBase	E_val: 2.00E-108	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0010162	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed dormancy process	SoyBase	N/A	ISS
GO:0010431	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed maturation	SoyBase	N/A	ISS
GO:0071215	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0045735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity	SoyBase	N/A	ISS
PF00190	PFAM	Cupin	JGI		ISS
UniRef100_P11828	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glycinin G3 n=1 Tax=Glycine max RepID=GLYG3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P11828	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glycinin G3 n=1 Tax=Glycine max RepID=GLYG3_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma19g34780

Locus	Gene Symbol	Protein Name
	Gy3	Glycinin gene 3

Expression Patterns of Glyma19g34780

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g34780

Paralog	Evidence	Comments
Glyma03g32030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g34780 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g164900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g34780

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g34780

Limit To All Plant Sequences

>Glyma19g34780.1   sequence type=CDS   gene model=Glyma19g34780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTAAGCTTGTTCTTTCCCTTTGTTTTCTGCTTTTCAGTGGCTGCTGCTTCGCTTTCAGTTTCAGAGAGCAGCCACAGCAAAACGAGTGCCAGATCCAACGCCTCAATGCCCTCAAACCGGATAACCGTATAGAGTCAGAAGGTGGCTTCATTGAGACATGGAACCCTAACAACAAGCCATTCCAGTGTGCCGGTGTTGCCCTCTCTCGCTGCACCCTCAACCGCAACGCCCTTCGCAGACCTTCCTACACCAACGCTCCCCAGGAGATCTACATCCAACAAGGTAGTGGTATTTTTGGCATGATATTCCCGGGTTGTCCTAGCACATTTGAAGAGCCTCAACAAAAAGGACAAAGCAGCAGGCCCCAAGACCGTCACCAGAAGATCTATCACTTCAGAGAGGGTGATTTGATTGCAGTGCCAACCGGTTTTGCATACTGGATGTACAACAATGAAGACACTCCTGTTGTTGCCGTTTCTCTTATTGACACCAACAGCTTCCAGAACCAGCTCGACCAGATGCCTAGGAGATTCTATCTTGCTGGGAACCAAGAGCAAGAGTTTCTACAGTATCAGCCACAGAAGCAGCAAGGAGGTACTCAAAGCCAGAAAGGAAAGCGTCAGCAAGAAGAAGAAAACGAAGGAGGCAGCATATTGAGTGGCTTCGCCCCGGAATTCTTGGAACATGCGTTCGTCGTGGACAGGCAGATAGTGAGAAAGCTACAAGGTGAGAACGAAGAGGAAGAGAAGGGTGCCATTGTGACAGTGAAAGGAGGTCTCAGCGTGATAAGCCCACCCACGGAAGAGCAGCAACAAAGACCCGAGGAAGAGGAGAAGCCAGATTGTGACGAGAAAGACAAACATTGCCAAAGCCAAAGCAGAAATGGCATTGACGAGACCATTTGCACAATGAGACTTCGCCACAACATTGGCCAGACTTCATCACCTGACATCTTCAACCCTCAAGCTGGTAGCATCACAACCGCTACCAGCCTCGACTTCCCAGCCCTCTCGTGGCTCAAACTCAGTGCCCAGTTTGGATCACTCCGCAAGAATGCTATGTTCGTGCCACACTACAACCTGAACGCAAACAGCATAATATACGCATTGAATGGACGGGCATTGGTACAAGTGGTGAATTGCAATGGTGAGAGAGTGTTTGATGGAGAGCTGCAAGAGGGACAGGTGTTAATTGTGCCACAAAACTTTGCGGTGGCTGCAAGATCACAGAGCGACAACTTCGAGTATGTTTCATTCAAGACCAATGATAGACCCTCGATCGGCAACCTTGCAGGTGCAAACTCATTGTTGAACGCATTGCCGGAGGAAGTGATTCAGCAAACTTTTAACCTAAGGAGGCAGCAGGCCAGGCAGGTCAAGAACAACAACCCTTTCAGCTTCCTGGTTCCACCTAAGGAGTCTCAGAGGAGAGTTGTGGCTTAG

Predicted protein sequences of Glyma19g34780

Limit To All Plant Sequences

>Glyma19g34780.1   sequence type=predicted peptide   gene model=Glyma19g34780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKLVLSLCFLLFSGCCFAFSFREQPQQNECQIQRLNALKPDNRIESEGGFIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNAPQEIYIQQGSGIFGMIFPGCPSTFEEPQQKGQSSRPQDRHQKIYHFREGDLIAVPTGFAYWMYNNEDTPVVAVSLIDTNSFQNQLDQMPRRFYLAGNQEQEFLQYQPQKQQGGTQSQKGKRQQEEENEGGSILSGFAPEFLEHAFVVDRQIVRKLQGENEEEEKGAIVTVKGGLSVISPPTEEQQQRPEEEEKPDCDEKDKHCQSQSRNGIDETICTMRLRHNIGQTSSPDIFNPQAGSITTATSLDFPALSWLKLSAQFGSLRKNAMFVPHYNLNANSIIYALNGRALVQVVNCNGERVFDGELQEGQVLIVPQNFAVAARSQSDNFEYVSFKTNDRPSIGNLAGANSLLNALPEEVIQQTFNLRRQQARQVKNNNPFSFLVPPKESQRRVVA*

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