SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G06150 | AT | Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1869228-1873194 REVERSE LENGTH=734 | SoyBase | E_val: 8.00E-159 | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR13902 | Panther | SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED | JGI | ISS | |
| PTHR13902:SF31 | Panther | TRANSCRIPTION FACTOR | JGI | ISS | |
| UniRef100_B9T2A6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Basic helix-loop-helix-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T2A6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233F2C9 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233F2C9 related cluster n=1 Tax=unknown RepID=UPI000233F2C9 | SoyBase | E_val: 0 | ISS |
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Glyma19g34621 not represented in the dataset |
Glyma19g34621 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g31876 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g163300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g34621.1 sequence type=CDS gene model=Glyma19g34621 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTACCAACTTGCACCAAGTACTCGGAAGCCTCTGTTTGAATACTCACTGGAACTACGCCATCTTTTGGAAGCTCAAACATCGTGCTCGAATGATCTTGACATGGGAGGATGCATATTATAACAATCCTGATGATTTCGACTCTTCAGAAAATAAACACTGCCAGAAGACCTTGGAACAGATTGGTTGTGGGAAATTTTCACACAGTGCATTAGGGTTAGCGGTGGCTAAGATGTCATATCATGCATATTCATTAGGAGAAGGTATTGTTGGACAGGTAGCTGTTACTGGAAAACATAGGTGGATCTGTGCAGATAATCAAGTTGCGAGTTCTGGCTTGTCTTTTGAGTTTGCTGATGGGTGGCAGTCTCAGTTTTCTGCTGGAATCAGGACTATTGCTGTTGTTGCTGTAGTCCCTCTTGGTGTTGTTCAGCTTGGCTCTCTAAATAAAGTGATTGAAGATATGGGGTTTGTAACTCATATCAGAAATCTTTTTTTGTCTACTCAAAATTACTCAATCCAATGTCCTAGTCAAATACAGGGTAGTTTGAAGAGTTCATCTCAGCTGGACAAATCGAAGGAAAATTTTTCTTCAGATATTATGCGTACTTGCTTTTACGATACACAGAAATCTATGAAAAGTGAAACAGCAGATGTTTTAATGCCCCTTCAATGTTCTGGGACTGGGAGGAACTGTACACCTCCTTCTGCTTGTGAGAAAATGTCTGATAATGTGGCCAAGCAAGAGGGGCCTGAATTGTACAATGATGAAAGTTCCATTTTGCTTCAGTCGATATCCAATATGATGAATGTGGACTGTCAGGAATTTGAAGAGATGAAACCTCTATATGGGACAAAGTATGAAGGAGGAAGTAGTGGCTGCAAAGATATGAGATTGGAATCAGAAAAAAATGTCTCATCATTTTTAAATGATTTTGTTACAGATAATGCTAGCTTCAATGATGTAATATGTCCATCAGAAAAAGTCAGAGTTGATTCTGCATGCTTTCCTTCAGTTTTTCTTGATACAGTTGTTTGTGAAAGTGATAAATTGCATTATGCAGATATTAACCAAAAAGGGGCAGTGAATTTTGCCCAACCTTCAGAAGCAAACTCCCAGCAACATATTGAAAAGTCAAAGTTTCATACTGAGCCTTGTTACAAGGATATCCCAGACTTCCAAACTGAACCTTGTTACAAGGATGCCTCACACATATTGAAGTTCCCTGCTGGCTGTGAGCTACATGAAGCACTTGGACCAGCTTTTTTGAAAGGGGGTAAATGTTTAGATTGGCCAGCACAGATTAATCAAGAAATGAAATCTGTTGAAATGTCAGATGAGATTAGCACTAGTCAATTGACTTCTGAATCTTGTCCAGAACATCTTTTAGAAGCAATGCTGGCCAACTTTAGCCATAGTAATAATGATGTTAATAGTGAATTATCATTTTGTAAATCAAAGCAATCTGCAATTGTCTCTGCAAAAAATCATGAGGCTTCTATTCACAATGTGCATACTATTAATTCAGAAGGCTATTCGATAGATCAGCTCTCTCTTGTCAGAGAGGACAAACACCATTCTTTGAGTTCATCATCAGGGATATGTGGTGTGATGTCCTCAAAAGGTATTTCATCTACATTTCATAGTTCAAATAGTGGACAGCTTGAAAGGTCGTCTGAACCATCTAAGAACAGCAAAAAAAGGGCCAGGCCAGGGGAAAGTTGTAGGCCTCGGCCAAGGGACAGGCAACTGATCCAAGATCGTATCAAAGAGTTGAGAGAGCTGGTGCCAAATGGAGCAAAGTGCAGTATTGATTCACTCCTGGAGCGCACAATAAAGCACATGCTCTTTCTCCAAAGCATAACTAAACATGCTGACAAGTTAACTGACTTTTCTGATACGAAGTCAAAGTTGCATCATAAGGAAGCAGACATTCTTGGATCATCTAGTTATGAGCAGGGCTCAAGCTGGGCCATGGAGGTAGGGGGTCATCTGAAAGTTCATTCAATATTAGTGGAGAATCTTAGCAAGAATGGACAGATGCTTGTTGAGATGCTATGTGAGGAGTGCAACCATTTTCTTGAAATAGCAGAAGCCATAAGAAGTTTGGGCCTTACCATTTTGAAGGGTGCAACAAAAGCTCATGGTGAAAAGATGTGGATATGCTTTGTTGTCGAGGGTCAAAACAAGAGAAATGTACACAGATTGGATATCCTGTGGCCGCTTGTTCAAATACTGCAATCCAAGAGCACCGTGTATTCACATTAA
>Glyma19g34621.1 sequence type=predicted peptide gene model=Glyma19g34621 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGTNLHQVLGSLCLNTHWNYAIFWKLKHRARMILTWEDAYYNNPDDFDSSENKHCQKTLEQIGCGKFSHSALGLAVAKMSYHAYSLGEGIVGQVAVTGKHRWICADNQVASSGLSFEFADGWQSQFSAGIRTIAVVAVVPLGVVQLGSLNKVIEDMGFVTHIRNLFLSTQNYSIQCPSQIQGSLKSSSQLDKSKENFSSDIMRTCFYDTQKSMKSETADVLMPLQCSGTGRNCTPPSACEKMSDNVAKQEGPELYNDESSILLQSISNMMNVDCQEFEEMKPLYGTKYEGGSSGCKDMRLESEKNVSSFLNDFVTDNASFNDVICPSEKVRVDSACFPSVFLDTVVCESDKLHYADINQKGAVNFAQPSEANSQQHIEKSKFHTEPCYKDIPDFQTEPCYKDASHILKFPAGCELHEALGPAFLKGGKCLDWPAQINQEMKSVEMSDEISTSQLTSESCPEHLLEAMLANFSHSNNDVNSELSFCKSKQSAIVSAKNHEASIHNVHTINSEGYSIDQLSLVREDKHHSLSSSSGICGVMSSKGISSTFHSSNSGQLERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERTIKHMLFLQSITKHADKLTDFSDTKSKLHHKEADILGSSSYEQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEECNHFLEIAEAIRSLGLTILKGATKAHGEKMWICFVVEGQNKRNVHRLDILWPLVQILQSKSTVYSH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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