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Report for Sequence Feature Glyma19g34580

Feature Type:gene_model
Chromosome:Gm19
Start:42149386
stop:42158504
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g34580
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G31320AT Annotation by Michelle Graham. TAIR10: poly(ADP-ribose) polymerase 2 | chr2:13354046-13359578 REVERSE LENGTH=983 SoyBaseE_val: 0ISS
GO:0000226GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization SoyBaseN/AISS
GO:0000724GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination SoyBaseN/AISS
GO:0000911GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006281GO-bp Annotation by Michelle Graham. GO Biological Process: DNA repair SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0006342GO-bp Annotation by Michelle Graham. GO Biological Process: chromatin silencing SoyBaseN/AISS
GO:0006346GO-bp Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006471GO-bp Annotation by Michelle Graham. GO Biological Process: protein ADP-ribosylation SoyBaseN/AISS
GO:0006979GO-bp Annotation by Michelle Graham. GO Biological Process: response to oxidative stress SoyBaseN/AISS
GO:0007129GO-bp Annotation by Michelle Graham. GO Biological Process: synapsis SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0007267GO-bp Annotation by Michelle Graham. GO Biological Process: cell-cell signaling SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0009909GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of flower development SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010073GO-bp Annotation by Michelle Graham. GO Biological Process: meristem maintenance SoyBaseN/AISS
GO:0010212GO-bp Annotation by Michelle Graham. GO Biological Process: response to ionizing radiation SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0010564GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process SoyBaseN/AISS
GO:0016246GO-bp Annotation by Michelle Graham. GO Biological Process: RNA interference SoyBaseN/AISS
GO:0016444GO-bp Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination SoyBaseN/AISS
GO:0016570GO-bp Annotation by Michelle Graham. GO Biological Process: histone modification SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048449GO-bp Annotation by Michelle Graham. GO Biological Process: floral organ formation SoyBaseN/AISS
GO:0051322GO-bp Annotation by Michelle Graham. GO Biological Process: anaphase SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003950GO-mf Annotation by Michelle Graham. GO Molecular Function: NAD+ ADP-ribosyltransferase activity SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0051287GO-mf Annotation by Michelle Graham. GO Molecular Function: NAD binding SoyBaseN/AISS
KOG1037 KOG NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins JGI ISS
PTHR15447Panther POLY [ADP-RIBOSE] POLYMERASE JGI ISS
PF00533PFAM BRCA1 C Terminus (BRCT) domain JGI ISS
PF00644PFAM Poly(ADP-ribose) polymerase catalytic domain JGI ISS
PF00645PFAM Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region JGI ISS
PF02877PFAM Poly(ADP-ribose) polymerase, regulatory domain JGI ISS
PF05406PFAM WGR domain JGI ISS
PF08063PFAM PADR1 (NUC008) domain JGI ISS
UniRef100_B9S4L5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Poly [ADP-ribose] polymerase, putative n=1 Tax=Ricinus communis RepID=B9S4L5_RICCO SoyBaseE_val: 0ISS
UniRef100_I1N9P4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9P4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g34580
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g34580 not represented in the dataset
Glyma19g34580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g34580
ParalogEvidenceComments
Glyma03g31820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g34580 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g162800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g34580
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g34580
>Glyma19g34580.1   sequence type=CDS   gene model=Glyma19g34580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTAACCCTCAAGACCAGAAACCATGGAAAGCGGAATACGCGAAGTCTGGGAGATCTTCATGCAGGACGTGCAAGAGCCCCATTGCCAGCGAAACGCTGCGTCTCGGGAAGATGGTTCAATCCACCAAATTCGATGGCCTCGTGCCCATGTGGAACCATGCTGCTTGCGTATTGAAGAAAGCCAATCAGATAAAATTAGTTGAAGATGTTGAAAACTTAGAGTCACTTCGTTGGGAAGATCAGCAGAAGATCAGAAAATACATAGAGAGTGGCGGCGGTGGCGGCAGCAGCAGTGGCGGGGGCAGCGCGGCAAAGTCAGACTCCAAGACTGTCAAAGATACTAAATGTGGTATTGAAGTTTCACAAAATTCTCGTGCCACATGCAAGGATTGCGGTCAAAAAATTATCAAAGGAGAGGTTCGTATATCTACTAAGCAAGGTGGTCAAGGTGCTAAAGGTTTGGCTTGGCACCATGCCAAGTGTCTCATCGATCTGTCACCATCAATTGAAGTGGATAAGTTATCTGGATGGAACAATCTCTCATCTTCTGATCAATCAGCTGTCATTGACTTCGCTAAAAAGGGTGGTAGTGATACAAAAATTGAGACTGAGGAGGGTAAAGAATCCACACCACAACAAACTTCCAAAGGTGGCATAAAACGGGGGAAGGATGTTGATAGTGAGCGGAAATCAAAAGTTGCTAAGGCCAAGGGAGATGTGTCTGTGGGCAGCGCAATGTCAGTGAAATCAGGGGAAGCATGTGATCTGGAGAAGAAAATGGAGACCCAAAGCAAAGAACTCTGGGATTTGAAGGACGATCTCAAAAAGCACGTTACAACAACAGAGTTGCGTGAAATGTTGGAAGCCAGTGGTCAAGATTCAACAGGATCAGAACTTGATTTACGTGACCGCTGTGCTGATGGAATGATGTTTGGAGCACTTGATCTTTGCCCAATATGTTCTGGCTTTCTGCGTTACTCTGGAGGAATGTACCGGTGCCATGGATACATTTCCGAGTGGAGTAAATGTTCTTACTCTACCTGTGAACCAAAACGTATTGAAGGGAAGTGGAAAATCCCAAAAGAAACAAATAATCAGTACCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAGTTAGGATATTGCCTCTTCCATCACCAAGGAAATCTGCTGAAAGTCAAATGATTGCTAGTCAGCATCAATCATCAAATAGTGGAAATTTACGAGATTTGAAAGTTGCTATCTGTGGATTACCTAATGACTCTATTGCGGAATGGAAATGCAAAATTGATGGCATATGTGGGATGTTTCATGCAAAAGTAAATAAAGATACTAACTGCTTGGTGGTTGGTGGATCACTCAATTATGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAATACCAATAGTCAGAGAGGACTATTTGATTGACTGCTTAGCAAGAAAGAAAAGGCTTCCATTTGATATGTACAAGGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACCATTAAAGTGAAGGGACATAGTGCTGTTCACGAGGCTTCTGGCCTACAGGATTCCGGCCACATACTTGAGGAAGGGAAAAGCATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGCTACTACATTCTCCAGATAATCCAAGAAGATAAGGGGTCAGATTGCTATGTGTTTCGTAAATGGGGCCGAGTTGGAAATGACAAGATTGGAGGAACAAAGCTGGAGGAAATGTCAAAATCTGATGCAGTATGTGAATTCAAACGATTATTCTATGAGAAGACTGGAAACCCTTGGGACGCATGGGAACAAAAGACTATCCAGAAGCAACCTGGAAGATTTTTCCCATTGGATATTGACTATGGAGTTAACAAACAGGTCTCAAAAAAGGAAAAAAATGATGTCGACAGCAAACTACCTCCTCCATTAATAGAATTGATGAAGATGCTCTTTAATGTGGAAACATACAGAGCTGCCATGATGGAATTTGAGATCAATATGTCTGAAATGCCACTTGGGAAATTGAGCAAAAGCAACATCCAAAAGGGGTTTGAAGCATTGACAGAGATACAAAATCTGTTAAAAATTAGCAATCCCGATCCATCAGTCAAGGAAAGCTTACTTATTAATGCCAGCAATCGGTTCTTCACCATGATCCCTTCTGTTCATCCACATATTATTAGGGATGAGGATGACTTTAAGTCCAAGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATTGCCTCAAGATTAGTTGGATTTGATGCCAACAATGATGATTCCATTGATGATAATTATAAGAAGCTTCACTGTGATATATCTCCACTTCCTCATGATAGTGAAGAGTTTTGTTTAATTGAGAAGTTTCTCCATAATACTCATGCCCCCACACATACGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATGTTTGGCAAAGGGGTTTACTTTGCTGACCTGGTCAGCAAAAGTGCTCAGTATTGCTTCACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCACTTGGAAATGTCTATGAGCTCAAGAAAGCGAAGTATATGGATAAACCTCCTGAAGGAAAGCACTCTACTAAAGGACTGGGCAAGAAAATGCCTCAGGAATCAGAATATGTAAAGTGGAGGGGCAATGTCACTGTTCCTTGTGGCAAACCAGTTCCATCAAATGTCAAGAGTTCTGAGCTCATGTACAATGAGTATATTGTTTATAATACTGCTCAAGTTAAGATGCAATTCTTGTTGAAGGTGAGGTTTCATCACAAGAGATGA
Predicted protein sequences of Glyma19g34580
>Glyma19g34580.1   sequence type=predicted peptide   gene model=Glyma19g34580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNPQDQKPWKAEYAKSGRSSCRTCKSPIASETLRLGKMVQSTKFDGLVPMWNHAACVLKKANQIKLVEDVENLESLRWEDQQKIRKYIESGGGGGSSSGGGSAAKSDSKTVKDTKCGIEVSQNSRATCKDCGQKIIKGEVRISTKQGGQGAKGLAWHHAKCLIDLSPSIEVDKLSGWNNLSSSDQSAVIDFAKKGGSDTKIETEEGKESTPQQTSKGGIKRGKDVDSERKSKVAKAKGDVSVGSAMSVKSGEACDLEKKMETQSKELWDLKDDLKKHVTTTELREMLEASGQDSTGSELDLRDRCADGMMFGALDLCPICSGFLRYSGGMYRCHGYISEWSKCSYSTCEPKRIEGKWKIPKETNNQYLKKWFKSQKGKKPVRILPLPSPRKSAESQMIASQHQSSNSGNLRDLKVAICGLPNDSIAEWKCKIDGICGMFHAKVNKDTNCLVVGGSLNYEAEMRKARRMKIPIVREDYLIDCLARKKRLPFDMYKVEMIGEASSMVTIKVKGHSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGINSYYILQIIQEDKGSDCYVFRKWGRVGNDKIGGTKLEEMSKSDAVCEFKRLFYEKTGNPWDAWEQKTIQKQPGRFFPLDIDYGVNKQVSKKEKNDVDSKLPPPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTEIQNLLKISNPDPSVKESLLINASNRFFTMIPSVHPHIIRDEDDFKSKVKMLEALQDIEIASRLVGFDANNDDSIDDNYKKLHCDISPLPHDSEEFCLIEKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFAPYRDKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPEGKHSTKGLGKKMPQESEYVKWRGNVTVPCGKPVPSNVKSSELMYNEYIVYNTAQVKMQFLLKVRFHHKR*






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