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Report for Sequence Feature Glyma19g34570

Feature Type:gene_model
Chromosome:Gm19
Start:42146711
stop:42147868
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g34570
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58180AT Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr3:21544189-21545981 FORWARD LENGTH=314 SoyBaseE_val: 4.00E-85ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0030089GO-cc Annotation by Michelle Graham. GO Cellular Compartment: phycobilisome SoyBaseN/AISS
GO:0016829GO-mf Annotation by Michelle Graham. GO Molecular Function: lyase activity SoyBaseN/AISS
KOG0567 KOG HEAT repeat-containing protein JGI ISS
PTHR12697Panther PBS LYASE HEAT-LIKE PROTEIN JGI ISS
PF03130PFAM PBS lyase HEAT-like repeat JGI ISS
UniRef100_B9S4W3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Lyase, putative n=1 Tax=Ricinus communis RepID=B9S4W3_RICCO SoyBaseE_val: 5.00E-84ISS
UniRef100_UPI000233F2C8UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F2C8 related cluster n=1 Tax=unknown RepID=UPI000233F2C8 SoyBaseE_val: 4.00E-121ISS

Expression Patterns of Glyma19g34570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g34570
ParalogEvidenceComments
Glyma03g31800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g34570 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma19g34570
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g34570
>Glyma19g34570.2   sequence type=CDS   gene model=Glyma19g34570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCGTGGAACGACGTCGCTTTAGTGTCCTCGGAGATGGAGAAGTTCCTGTGCGAGTTGTTGCTGGATTCCTCCCAGCCAATTTCTGAGCGCTTCAGAGCATTCTTCTCTCTCCGCAACCTCAAAGGCGCCTCCACTCGCAACGCTCTTATTCTCGCCACAAGGGATTCGTCGAATTTGTTGGCGCACGAAGCTGCATTTGCGTTGGGTCATATGCAGGAATTGGAAGCCATCCCTGCTTTGGCCTCAGTTCTCAATGATCTTTCTTTGCATCACATTGTTCGCCATGAGGCAGCTGAGGCTCTGGGTGCTATTGGTTCAGATGGTAATGTTCCTCTCCTGAAAAATAGTTTGGATTCAGATCCGGCCGAGGAGGTTCGAGAAACATGTGAATTGGCTCTTGAACGAATTCAGAATTTAAAAGATGCTGCTGCACCAGCGACCCCTGACAAGTGCTTATTGATGAAGAAACAAGGGATGTATGAGCGCTATGCAGCTCTTTTTGCACTTCGTAATGACGGTGGAAATGATGCTGTTGCTGCTATTATTGATTCCTTGGGCTCAAAAAGTGCTCTACTGTGCCATGAGGTTCGATAA
Predicted protein sequences of Glyma19g34570
>Glyma19g34570.2   sequence type=predicted peptide   gene model=Glyma19g34570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSWNDVALVSSEMEKFLCELLLDSSQPISERFRAFFSLRNLKGASTRNALILATRDSSNLLAHEAAFALGHMQELEAIPALASVLNDLSLHHIVRHEAAEALGAIGSDGNVPLLKNSLDSDPAEEVRETCELALERIQNLKDAAAPATPDKCLLMKKQGMYERYAALFALRNDGGNDAVAAIIDSLGSKSALLCHEVR*






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