Glyma19g34520 - SoyBase

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Report for Sequence Feature Glyma19g34520

Feature Type:	gene_model
Chromosome:	Gm19
Start:	42117937
stop:	42122773
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g34520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G03030	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr4:1335942-1337270 REVERSE LENGTH=442	SoyBase	E_val: 5.00E-158	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24414	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24414:SF184	Panther		JGI		ISS
PF01344	PFAM	Kelch motif	JGI		ISS
UniRef100_Q0V7S6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein OR23 n=1 Tax=Arabidopsis thaliana RepID=FK125_ARATH	SoyBase	E_val: 3.00E-155	ISS
UniRef100_UPI0002336D5A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002336D5A related cluster n=1 Tax=unknown RepID=UPI0002336D5A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g34520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g34520

Paralog	Evidence	Comments
Glyma03g31740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g34520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g162400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g34520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g34520

Limit To All Plant Sequences

>Glyma19g34520.2   sequence type=CDS   gene model=Glyma19g34520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCCTATTGGGACACCGGCGCCGGCGGTGGCGGTGGCGCGACGCTCATCCCGGGTCTCCCAAACGACGTCGCGGCGTCGATCCTCTCGATGGTCCCCTACTCCCACCACGGGAGGCTCAAAGCCACATGCAAATCATGGAAACTGCTTCTCTCCTCGAAATTTTTCTTAGCCTCGCTGAACGGAAAGAACCACCTTCTCTGCATCTTCCCGCAAGATCCTTCAATCGCTTCACCCTTTCTGTTTGATCCGAACGCGCTCGCGTGGTGCCCGCTCCCTCTCATGCCCTGCAACCCCCACGTGTACGGCCTCTGCAACTTCGCCGCCGTCTCCCTCGGGTCCCACCTCTACGTCCTCGGTGGGTCCCTCTTCGACACGCGCTCCTTCCCCATCGATCGCCCCTCGCCGTCCTCCGCCACGTTCCGCTTCAGCTTCCACGACTTTTCGTGGGAGCCACGCGCCCAGATGCTGTCTCCGAGGGGGAGCTTCGCCTGCGCGGTGGTGCCGGCCCGCGGGAGCATTTATGTGGCCGGTGGGGGCTCGAGGCATACGATGTTCGGGGCGGCGGGGTCGAGGATTCGGTCGGTGGAGCGGTACGAGGTGGGGAGGGACCGGTGGGTGCCGATGGAGAATCTCCCCGGGTTTCGTGCCGGGTGCGTGGGGTTTGTCGGAGAGGAGGGGAGGGAGTTCTGGGTGATGGGAGGGTATGGCGCGTCGAGGACCATATCGGGGGTGTTTCCGGTGGATGAGTATTATAGGGATGCGGTAGTGATGGGAGTGGAGAGTGGCGCTTGGAGAGAGGTTGGGGATATGTGGGGGAATGAGGAGAGGGTCAGGGTTGGGAAGATTGTGGTGGTTGAATATAATGGATGTCCCATGCTTTTCATGCTTGATGGAAATGAGATTTTGAGATATGACATGTCTTCAAATCGTTGGCTATACGAGTCTCGTGTGCCAAGAAAAGCTCCTTACTATTCGTCATTTGGGGTTGTTGTGTTAGACAGGGAGCTGTATGTAGTGACACATTTATGTGTTGTTGATTTTACTGAAACACGGAGGTCCAGACAACATAAGAGGGCAGGAACTCTGTTCATTCAAATCTACGACCCAAAAAACAAGACATGGAGATCGCTTGTTGCCAAATCACCTTTCAATTACCCTATAGATATTAATAGTGCTGTATTGAGCTCAATTTGTCTATGA

Predicted protein sequences of Glyma19g34520

Limit To All Plant Sequences

>Glyma19g34520.2   sequence type=predicted peptide   gene model=Glyma19g34520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSYWDTGAGGGGGATLIPGLPNDVAASILSMVPYSHHGRLKATCKSWKLLLSSKFFLASLNGKNHLLCIFPQDPSIASPFLFDPNALAWCPLPLMPCNPHVYGLCNFAAVSLGSHLYVLGGSLFDTRSFPIDRPSPSSATFRFSFHDFSWEPRAQMLSPRGSFACAVVPARGSIYVAGGGSRHTMFGAAGSRIRSVERYEVGRDRWVPMENLPGFRAGCVGFVGEEGREFWVMGGYGASRTISGVFPVDEYYRDAVVMGVESGAWREVGDMWGNEERVRVGKIVVVEYNGCPMLFMLDGNEILRYDMSSNRWLYESRVPRKAPYYSSFGVVVLDRELYVVTHLCVVDFTETRRSRQHKRAGTLFIQIYDPKNKTWRSLVAKSPFNYPIDINSAVLSSICL*

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