Glyma19g34430 - SoyBase

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Report for Sequence Feature Glyma19g34430

Feature Type:	gene_model
Chromosome:	Gm19
Start:	42028726
stop:	42032578
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g34430

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09690	AT	Annotation by Michelle Graham. TAIR10: magnesium transporter 7 \| chr5:3000990-3003169 REVERSE LENGTH=386	SoyBase	E_val: 8.00E-172	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0015095	GO-mf	Annotation by Michelle Graham. GO Molecular Function: magnesium ion transmembrane transporter activity	SoyBase	N/A	ISS
GO:0046873	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion transmembrane transporter activity	SoyBase	N/A	ISS
KOG2662	KOG	Magnesium transporters: CorA family	JGI		ISS
PTHR13890	Panther	RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL	JGI		ISS
PF01544	PFAM	CorA-like Mg2+ transporter protein	JGI		ISS
UniRef100_B9S4T3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA splicing protein mrs2, mitochondrial, putative n=1 Tax=Ricinus communis RepID=B9S4T3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N9N1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9N1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g34430

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g34430

Paralog	Evidence	Comments
Glyma03g31600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g34430 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g161600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g34430

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g34430

Limit To All Plant Sequences

>Glyma19g34430.2   sequence type=transcript   gene model=Glyma19g34430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTTTAACCTCCTCTCTACTACTGCCACTCACAACCCCACTAACCTGTCACCAAATCAACTCATGCAAGATATCTTTCATTGCTCCTTAACTCTTCCAAATGATACCATCACTGTCTCATCTTCTTCTCATAACCCTCTTTCTCCATGGCTCTTGCTGGCTCTGTGGTTGAGCTTCAAGCCTCTTCAGTAAAGAAGAAAACTGCAGTTTCCAGAAGTTGGATTCTGCTGGACCACTATGGCAAAGGCACTGTTCTTGATGCGGATAAGTATGCTATCATGCGCCTGGTTCAAATTCACGCCAGAGATCTTCGGATTCTCGACCCTCTCTTATCGTATCCTTCCACCATTTTGGGCAGAGAGAAAGTCATTGTTCTCAATTTAGAGCACATTAAAGCTATCATCACTGCAGATGAGGTGTTGCTAAGAGACCCAACGGATGATGACGTTGTTCCAATTGTTGAGGAACTTCGACGACGGTTACCCAAAGTAAGTGCTGCTGAGCAAGGCCAAGGAGAAGAAGAGGCGTGTGCTCAAGATGGTGAAGGTGGAGAAGAAAATGAATTTCCATTTGAGATACGAGCTTTGGAAGTTTTATTTGAGGCAATTTGTAGTTTCCTTGATGCACGAACGAGAGAGCTAGAGACTTCTGCTTATCCAGCTTTGGACGAACTGACCTCTAAGATCAGTAGTCGTAATTTGGATAGAGTGCGGAAATTGAAATGTGCAATGACCAGGTTGACAATTCGAGTTCAAAAGATTAGGGATGAACTAGAAAACCTACTTGATGACGACGACGACATGGCTGATCTTTACTTATCAAGAAAATTGGCTGCTTCATCCTCTCCAACTAGTAGCTCTGATGCTCCATACTGGCTTTATGGGTCTCCAAATACAGGTTCAAAACGACACAAATCAAGCAGAGCAAGTGGAACAACAGTTCAAAGGGAGAATGATGTTGAGGAGCTCGAAATGTTACTTGAGGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACATTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAGCTTGACAATCACCGAAATCAACTGATTCAGGTATAAGCTTTTCAAGGTGGTTATTTTCTCCTTATGAGGTTATGTATCAGTATCAATATCAATATGTCTATTGACACAAACATTTTTTGAAACATTTGTTACCAAAGCCATGAATGATGTCTTTAAGTACTAGTGTTATTGTCTCTCATTCTTTGGTACAGCTAGAGCTCTTCATTAGTGCCGGGACTGTCTGTATGTCCTTATATTCATTGGTGGCTGCAATATTTGGTATGAACATACCATATACATGGAAAGCACCAGGCCATGAACATGTGTTTAAATGGGTGGTGATCTTTGGCGGAATGGTTTGTGCATCCTTGTTTTTATCCATAGTATCGTATGCCCGACGCAAAGGCCTTGTTGGGTCTTGAAAAATGAAAAGAATAAAGCATGCATGTCGGGAGACATCAGGTTAAGTCAAAAGTAGGCAATTTCGACACATTGCCTCAAAACAATACTATAGTAATTTGCTTTTATCTTTTTTCTATATGGAGGGTCAAATATAGTACCAGAACTTTATAACATTCACTTATTCTATTCAATCATGAGCTAGACTTTCTTTATAATATTCTTTTATCTTGTAACTAACTAATTAACTCGCAATTTAGATAAAATGACTATTAGTGGGCAAGATGAATGCATTGAGTATTATTTTAATAATAATTA

Coding sequences of Glyma19g34430

Limit To All Plant Sequences

>Glyma19g34430.1   sequence type=CDS   gene model=Glyma19g34430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTGCTGGCTCTGTGGTTGAGCTTCAAGCCTCTTCAGTAAAGAAGAAAACTGCAGTTTCCAGAAGTTGGATTCTGCTGGACCACTATGGCAAAGGCACTGTTCTTGATGCGGATAAGTATGCTATCATGCGCCTGGTTCAAATTCACGCCAGAGATCTTCGGATTCTCGACCCTCTCTTATCGTATCCTTCCACCATTTTGGGCAGAGAGAAAGTCATTGTTCTCAATTTAGAGCACATTAAAGCTATCATCACTGCAGATGAGGTGTTGCTAAGAGACCCAACGGATGATGACGTTGTTCCAATTGTTGAGGAACTTCGACGACGGTTACCCAAAGTAAGTGCTGCTGAGCAAGGCCAAGGAGAAGAAGAGGCGTGTGCTCAAGATGGTGAAGGTGGAGAAGAAAATGAATTTCCATTTGAGATACGAGCTTTGGAAGTTTTATTTGAGGCAATTTGTAGTTTCCTTGATGCACGAACGAGAGAGCTAGAGACTTCTGCTTATCCAGCTTTGGACGAACTGACCTCTAAGATCAGTAGTCGTAATTTGGATAGAGTGCGGAAATTGAAATGTGCAATGACCAGGTTGACAATTCGAGTTCAAAAGATTAGGGATGAACTAGAAAACCTACTTGATGACGACGACGACATGGCTGATCTTTACTTATCAAGAAAATTGGCTGCTTCATCCTCTCCAACTAGTAGCTCTGATGCTCCATACTGGCTTTATGGGTCTCCAAATACAGGTTCAAAACGACACAAATCAAGCAGAGCAAGTGGAACAACAGTTCAAAGGGAGAATGATGTTGAGGAGCTCGAAATGTTACTTGAGGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACATTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAGCTTGACAATCACCGAAATCAACTGATTCAGCTAGAGCTCTTCATTAGTGCCGGGACTGTCTGTATGTCCTTATATTCATTGGTGGCTGCAATATTTGGTATGAACATACCATATACATGGAAAGCACCAGGCCATGAACATGTGTTTAAATGGGTGGTGATCTTTGGCGGAATGGTTTGTGCATCCTTGTTTTTATCCATAGTATCGTATGCCCGACGCAAAGGCCTTGTTGGGTCTTGA

>Glyma19g34430.2   sequence type=CDS   gene model=Glyma19g34430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTGCTGGCTCTGTGGTTGAGCTTCAAGCCTCTTCAGTAAAGAAGAAAACTGCAGTTTCCAGAAGTTGGATTCTGCTGGACCACTATGGCAAAGGCACTGTTCTTGATGCGGATAAGTATGCTATCATGCGCCTGGTTCAAATTCACGCCAGAGATCTTCGGATTCTCGACCCTCTCTTATCGTATCCTTCCACCATTTTGGGCAGAGAGAAAGTCATTGTTCTCAATTTAGAGCACATTAAAGCTATCATCACTGCAGATGAGGTGTTGCTAAGAGACCCAACGGATGATGACGTTGTTCCAATTGTTGAGGAACTTCGACGACGGTTACCCAAAGTAAGTGCTGCTGAGCAAGGCCAAGGAGAAGAAGAGGCGTGTGCTCAAGATGGTGAAGGTGGAGAAGAAAATGAATTTCCATTTGAGATACGAGCTTTGGAAGTTTTATTTGAGGCAATTTGTAGTTTCCTTGATGCACGAACGAGAGAGCTAGAGACTTCTGCTTATCCAGCTTTGGACGAACTGACCTCTAAGATCAGTAGTCGTAATTTGGATAGAGTGCGGAAATTGAAATGTGCAATGACCAGGTTGACAATTCGAGTTCAAAAGATTAGGGATGAACTAGAAAACCTACTTGATGACGACGACGACATGGCTGATCTTTACTTATCAAGAAAATTGGCTGCTTCATCCTCTCCAACTAGTAGCTCTGATGCTCCATACTGGCTTTATGGGTCTCCAAATACAGGTTCAAAACGACACAAATCAAGCAGAGCAAGTGGAACAACAGTTCAAAGGGAGAATGATGTTGAGGAGCTCGAAATGTTACTTGAGGCCTATTTCATGCAAATTGACGGCACATTAAATAAATTGGCCACATTGCGAGAATATATCGATGACACAGAAGATTACATCAACATACAGCTTGACAATCACCGAAATCAACTGATTCAGGTATAA

Predicted protein sequences of Glyma19g34430

Limit To All Plant Sequences

>Glyma19g34430.1   sequence type=predicted peptide   gene model=Glyma19g34430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALAGSVVELQASSVKKKTAVSRSWILLDHYGKGTVLDADKYAIMRLVQIHARDLRILDPLLSYPSTILGREKVIVLNLEHIKAIITADEVLLRDPTDDDVVPIVEELRRRLPKVSAAEQGQGEEEACAQDGEGGEENEFPFEIRALEVLFEAICSFLDARTRELETSAYPALDELTSKISSRNLDRVRKLKCAMTRLTIRVQKIRDELENLLDDDDDMADLYLSRKLAASSSPTSSSDAPYWLYGSPNTGSKRHKSSRASGTTVQRENDVEELEMLLEAYFMQIDGTLNKLATLREYIDDTEDYINIQLDNHRNQLIQLELFISAGTVCMSLYSLVAAIFGMNIPYTWKAPGHEHVFKWVVIFGGMVCASLFLSIVSYARRKGLVGS*

>Glyma19g34430.2   sequence type=predicted peptide   gene model=Glyma19g34430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALAGSVVELQASSVKKKTAVSRSWILLDHYGKGTVLDADKYAIMRLVQIHARDLRILDPLLSYPSTILGREKVIVLNLEHIKAIITADEVLLRDPTDDDVVPIVEELRRRLPKVSAAEQGQGEEEACAQDGEGGEENEFPFEIRALEVLFEAICSFLDARTRELETSAYPALDELTSKISSRNLDRVRKLKCAMTRLTIRVQKIRDELENLLDDDDDMADLYLSRKLAASSSPTSSSDAPYWLYGSPNTGSKRHKSSRASGTTVQRENDVEELEMLLEAYFMQIDGTLNKLATLREYIDDTEDYINIQLDNHRNQLIQV*

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