Glyma19g34390 - SoyBase

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Report for Sequence Feature Glyma19g34390

Feature Type:	gene_model
Chromosome:	Gm19
Start:	41993456
stop:	41998792
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g34390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03030	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr1:701621-703568 FORWARD LENGTH=301	SoyBase	E_val: 3.00E-123	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016773	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor	SoyBase	N/A	ISS
KOG2702	KOG	Predicted panthothenate kinase/uridine kinase-related protein	JGI		ISS
PTHR10285	Panther	URIDINE KINASE RELATED	JGI		ISS
PTHR10285:SF29	Panther	PHOSPHORIBULOKINASE	JGI		ISS
PF00485	PFAM	Phosphoribulokinase / Uridine kinase family	JGI		ISS
UniRef100_B9S4S4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9S4S4_RICCO	SoyBase	E_val: 2.00E-135	ISS
UniRef100_I1N9M3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N9M3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g34390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g34390

Paralog	Evidence	Comments
Glyma03g31545	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g34390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g161200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g34390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g34390

Limit To All Plant Sequences

>Glyma19g34390.2   sequence type=transcript   gene model=Glyma19g34390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAGTATGTATGTGAAAAGCGTGAGGCAGTGTTGTTGTTGACATGGTTGAAGGCGAAGGCGTTTGAAATCGAGTAAATGGAAGCGACATTCTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCACTGTCCATTGCGCGGCCTAGCAAGTTCGTGCAGCTGTCACTTGCTCGAACCAGGAAGAGTTCTTTCTTTAAGGTGTTATCTGCTGAAAAGGAACAAATTCACGTTGTAGAGGGAAGGCTTTTAGTTGGGCTGGCTGGTCCTCCTGGTGCTGGAAAAAGCACTCTAGCACATGAAGTAGCCAGACGTATAAACAAACTTTGGCCAGAGAAAGCTTCTTCCTTTGACTCTCAGGTTCAACTTCCAGATGTTGCTATTGTGGTTCCCATGGATGGTTTTCATCTTTACCGATCTGAACTAGACGAAATGGAGAATCCCGAGGAAGCACATGCCAGAAGGGGAGCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGAGAATGCATGGATCAGTTTATGTACCATCATTTGACCATGGTGTTGGGGACCCAGTTGAAGATGATATCTTTGTGAACCTTCAGCACAAGGTTGTTATTGTAGAAGGTAACTATTTGCTCTTGGAAGATGGGGTATGGAAGGAGATATCGTCTTTGTTTGACGAGAAATGGTTTATTGATATTGACATTGACAAAGCAATGCAGCGAGTTTTAAAGAGGCATATTTCAACTGGCAAGCCTCCAGACATTGCTAAACAGCGGATAGAGAACAACGACAGGCTTAATGCAGAACTTATAATGAAGTCCAAGAAAAATGCTGATATAATAATAAAGTCAATTGATTTCTGAGGAATCGGTTTGTGCCAAGTCAAGCCCAAGGAGAGTATTATAACCTGAAAAGGATGTCCGTAATAAATGAATTGTCCTTGTGATTTTTCAGAGTACAACAAACTGAAATTATTGTTGTTATTATACAACAGATTTTTAGTGCATTTTTTATTTTTTATTTTCCTCTGCCGTAAATTTAATTTTTTAACAGCTCAAATCCTAAAAATTATCCACAGGCCACAG

>Glyma19g34390.3   sequence type=transcript   gene model=Glyma19g34390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAGTATGTATGTGAAAAGCGTGAGGCAGTGTTGTTGTTGACATGGTTGAAGGCGAAGGCGTTTGAAATCGAGTAAATGGAAGCGACATTCTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCACTGTCCATTGCGCGGCCTAGCAAGTTCGTGCAGCTGTCACTTGCTCGAACCAGGAAGAGTTCTTTCTTTAAGGTGTTATCTGCTGAAAAGGAACAAATTCACGTTGTAGAGGGAAGTCGTGTTGATGAGTTATATGATGCATTGGTTACACGTATTCTGCCTTTGGTCTCAGTGTCATCAAATCCTAATCACAAGCTTTTAGTTGGGCTGGCTGGTCCTCCTGGTGCTGGAAAAAGCACTCTAGCACATGAAGTAGCCAGACGTATAAACAAACTTTGGCCAGAGAAAGCTTCTTCCTTTGACTCTCAGGTTCAACTTCCAGATGTTGCTATTGTGGTTCCCATGGATGGTTTTCATCTTTACCGATCTGAACTAGACGAAATGGAGAATCCCGAGGAAGCACATGCCAGAAGGGGAGCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGAGAATGCATGGATCAGTTTATGTACCATCATTTGACCATGGTGTTGGGGACCCAGTTGAAGATGATATCTTTGTGAACCTTCAGCACAAGGTTGTTATTGTAGAAGGTAACTATTTGCTCTTGGAAGATGGGGTATGGAAGGAGATATCGTCTTTGTTTGACGAGAAATGGTTTATTGATATTGACATTGACAAAGCAATGCAGCGAGTTTTAAAGAGGCATATTTCAACTGGTATTTTCTAAGCAAGCCTCCAGACATTGCTAAACAGCGGATAGAGAACAACGACAGGCTTAATGCAGAACTTATAATGAAGTCCAAGAAAAATGCTGATATAATAATAAAGTCAATTGATTTCTGAGGAATCGGTTTGTGCCAAGTCAAGCCCAAGGAGAGTATTATAACCTGAAAAGGATGTCCGTAATAAATGAATTGTCCTTGTGATTTTTCAGAGTACAACAAACTGAAATTATTGTTGTTATTATACAACAGATTTTTAGTGCATTTTTTATTTTTTATTTTCCTCTGCCGTAAATTTAATTTTTTAACAGCTCAAATCCTAAAAATTATCCACAGGCCACAG

>Glyma19g34390.4   sequence type=transcript   gene model=Glyma19g34390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAGTATGTATGTGAAAAGCGTGAGGCAGTGTTGTTGTTGACATGGTTGAAGGCGAAGGCGTTTGAAATCGAGTAAATGGAAGCGACATTCTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCACTGTCCATTGCGCGGCCTAGCAAGTTCGTGCAGCTGTCACTTGCTCGAACCAGGAAGAGTTCTTTCTTTAAGGTGTTATCTGCTGAAAAGGAACAAATTCACGTTGTAGAGGGAAGTCGTGTTGATGAGTTATATGATGCATTGGTTACACGTATTCTGCCTTTGGTCTCAGTGTCATCAAATCCTAATCACAAGCTTTTAGTTGGGCTGGCTGGTCCTCCTGGTGCTGGAAAAAGCACTCTAGCACATGAAGTAGCCAGACGTATAAACAAACTTTGGCCAGAGAAAGCTTCTTCCTTTGACTCTCAGGTTCAACTTCCAGATGTTGCTATTGTGGTTCCCATGGATGGTTTTCATCTTTACCGATCTGAACTAGACGAAATGGAGAATCCCGAGGAAGCACATGCCAGAAGGGGAGCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGAGAATGCATGTAAGGTTTATTAAATTTTTTAAGATTTAATGTTGTTGTTGTTATTATTAATATTATTCAGCATGGCTTGGAAAAGTGGAAACTTTAGAATTGGTTTATTGCCTTGACTTTTTCTCTCTCAAATTATATGCATTATGTTTATGGGAAAATTCTGTGTGAAAGCTGGGATGCACAGAAAGAACAGTAAGCATCTGTGCACTGACATGATGGAGTTCTTATCTGCT

Coding sequences of Glyma19g34390

Limit To All Plant Sequences

>Glyma19g34390.1   sequence type=CDS   gene model=Glyma19g34390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCGACATTCTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCACTGTCCATTGCGCGGCCTAGCAAGTTCGTGCAGCTGTCACTTGCTCGAACCAGGAAGAGTTCTTTCTTTAAGGTGTTATCTGCTGAAAAGGAACAAATTCACGTTGTAGAGGGAAGTCGTGTTGATGAGTTATATGATGCATTGGTTACACGTATTCTGCCTTTGGTCTCAGTGTCATCAAATCCTAATCACAAGCTTTTAGTTGGGCTGGCTGGTCCTCCTGGTGCTGGAAAAAGCACTCTAGCACATGAAGTAGCCAGACGTATAAACAAACTTTGGCCAGAGAAAGCTTCTTCCTTTGACTCTCAGGTTCAACTTCCAGATGTTGCTATTGTGGTTCCCATGGATGGTTTTCATCTTTACCGATCTGAACTAGACGAAATGGAGAATCCCGAGGAAGCACATGCCAGAAGGGGAGCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGAGAATGCATGGATCAGTTTATGTACCATCATTTGACCATGGTGTTGGGGACCCAGTTGAAGATGATATCTTTGTGAACCTTCAGCACAAGGTTGTTATTGTAGAAGGTAACTATTTGCTCTTGGAAGATGGGGTATGGAAGGAGATATCGTCTTTGTTTGACGAGAAATGGTTTATTGATATTGACATTGACAAAGCAATGCAGCGAGTTTTAAAGAGGCATATTTCAACTGGCAAGCCTCCAGACATTGCTAAACAGCGGATAGAGAACAACGACAGGCTTAATGCAGAACTTATAATGAAGTCCAAGAAAAATGCTGATATAATAATAAAGTCAATTGATTTCTGA

>Glyma19g34390.2   sequence type=CDS   gene model=Glyma19g34390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCGACATTCTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCACTGTCCATTGCGCGGCCTAGCAAGTTCGTGCAGCTGTCACTTGCTCGAACCAGGAAGAGTTCTTTCTTTAAGGTGTTATCTGCTGAAAAGGAACAAATTCACGTTGTAGAGGGAAGGCTTTTAGTTGGGCTGGCTGGTCCTCCTGGTGCTGGAAAAAGCACTCTAGCACATGAAGTAGCCAGACGTATAAACAAACTTTGGCCAGAGAAAGCTTCTTCCTTTGACTCTCAGGTTCAACTTCCAGATGTTGCTATTGTGGTTCCCATGGATGGTTTTCATCTTTACCGATCTGAACTAGACGAAATGGAGAATCCCGAGGAAGCACATGCCAGAAGGGGAGCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGAGAATGCATGGATCAGTTTATGTACCATCATTTGACCATGGTGTTGGGGACCCAGTTGAAGATGATATCTTTGTGAACCTTCAGCACAAGGTTGTTATTGTAGAAGGTAACTATTTGCTCTTGGAAGATGGGGTATGGAAGGAGATATCGTCTTTGTTTGACGAGAAATGGTTTATTGATATTGACATTGACAAAGCAATGCAGCGAGTTTTAAAGAGGCATATTTCAACTGGCAAGCCTCCAGACATTGCTAAACAGCGGATAGAGAACAACGACAGGCTTAATGCAGAACTTATAATGAAGTCCAAGAAAAATGCTGATATAATAATAAAGTCAATTGATTTCTGA

>Glyma19g34390.3   sequence type=CDS   gene model=Glyma19g34390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCGACATTCTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCACTGTCCATTGCGCGGCCTAGCAAGTTCGTGCAGCTGTCACTTGCTCGAACCAGGAAGAGTTCTTTCTTTAAGGTGTTATCTGCTGAAAAGGAACAAATTCACGTTGTAGAGGGAAGTCGTGTTGATGAGTTATATGATGCATTGGTTACACGTATTCTGCCTTTGGTCTCAGTGTCATCAAATCCTAATCACAAGCTTTTAGTTGGGCTGGCTGGTCCTCCTGGTGCTGGAAAAAGCACTCTAGCACATGAAGTAGCCAGACGTATAAACAAACTTTGGCCAGAGAAAGCTTCTTCCTTTGACTCTCAGGTTCAACTTCCAGATGTTGCTATTGTGGTTCCCATGGATGGTTTTCATCTTTACCGATCTGAACTAGACGAAATGGAGAATCCCGAGGAAGCACATGCCAGAAGGGGAGCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGAGAATGCATGGATCAGTTTATGTACCATCATTTGACCATGGTGTTGGGGACCCAGTTGAAGATGATATCTTTGTGAACCTTCAGCACAAGGTTGTTATTGTAGAAGGTAACTATTTGCTCTTGGAAGATGGGGTATGGAAGGAGATATCGTCTTTGTTTGACGAGAAATGGTTTATTGATATTGACATTGACAAAGCAATGCAGCGAGTTTTAAAGAGGCATATTTCAACTGGTATTTTCTAA

>Glyma19g34390.4   sequence type=CDS   gene model=Glyma19g34390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGCGACATTCTCTTCAACGACGGCAAGAGGATACTGGAATCAGACACGTGGTTCGACAGAACCTTTGTTGCTGAGAGTAGATGAGGCTCGCGATCGGAAACCGAGTTCACTGTCCATTGCGCGGCCTAGCAAGTTCGTGCAGCTGTCACTTGCTCGAACCAGGAAGAGTTCTTTCTTTAAGGTGTTATCTGCTGAAAAGGAACAAATTCACGTTGTAGAGGGAAGTCGTGTTGATGAGTTATATGATGCATTGGTTACACGTATTCTGCCTTTGGTCTCAGTGTCATCAAATCCTAATCACAAGCTTTTAGTTGGGCTGGCTGGTCCTCCTGGTGCTGGAAAAAGCACTCTAGCACATGAAGTAGCCAGACGTATAAACAAACTTTGGCCAGAGAAAGCTTCTTCCTTTGACTCTCAGGTTCAACTTCCAGATGTTGCTATTGTGGTTCCCATGGATGGTTTTCATCTTTACCGATCTGAACTAGACGAAATGGAGAATCCCGAGGAAGCACATGCCAGAAGGGGAGCTCCCTGGACATTCAATCCATTGCGACTACTTCAATGTCTCAAGAATCTGAGAATGCATGTAAGGTTTATTAAATTTTTTAAGATTTAA

Predicted protein sequences of Glyma19g34390

Limit To All Plant Sequences

>Glyma19g34390.1   sequence type=predicted peptide   gene model=Glyma19g34390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPSSLSIARPSKFVQLSLARTRKSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAGPPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPEEAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEGNYLLLEDGVWKEISSLFDEKWFIDIDIDKAMQRVLKRHISTGKPPDIAKQRIENNDRLNAELIMKSKKNADIIIKSIDF*

>Glyma19g34390.2   sequence type=predicted peptide   gene model=Glyma19g34390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPSSLSIARPSKFVQLSLARTRKSSFFKVLSAEKEQIHVVEGRLLVGLAGPPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPEEAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEGNYLLLEDGVWKEISSLFDEKWFIDIDIDKAMQRVLKRHISTGKPPDIAKQRIENNDRLNAELIMKSKKNADIIIKSIDF*

>Glyma19g34390.3   sequence type=predicted peptide   gene model=Glyma19g34390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPSSLSIARPSKFVQLSLARTRKSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAGPPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPEEAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEGNYLLLEDGVWKEISSLFDEKWFIDIDIDKAMQRVLKRHISTGIF*

>Glyma19g34390.4   sequence type=predicted peptide   gene model=Glyma19g34390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPSSLSIARPSKFVQLSLARTRKSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAGPPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPEEAHARRGAPWTFNPLRLLQCLKNLRMHVRFIKFFKI*

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