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Report for Sequence Feature Glyma19g34370

Feature Type:gene_model
Chromosome:Gm19
Start:41969221
stop:41971482
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g34370
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G43700AT Annotation by Michelle Graham. TAIR10: AUX/IAA transcriptional regulator family protein | chr5:17550465-17551206 FORWARD LENGTH=186 SoyBaseE_val: 1.00E-74ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006417GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of translation SoyBaseN/AISS
GO:0007020GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule nucleation SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009736GO-bp Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0046983GO-mf Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity SoyBaseN/AISS
PF02309PFAM AUX/IAA family JGI ISS
UniRef100_I1N9L9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9L9_SOYBN SoyBaseE_val: 2.00E-148ISS
UniRef100_O24543UniRef Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 22E n=1 Tax=Vigna radiata var. radiata RepID=AX22E_VIGRR SoyBaseE_val: 4.00E-110ISS

Expression Patterns of Glyma19g34370
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g34370
ParalogEvidenceComments
Glyma03g31520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g34370 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g161000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g34370
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma19g34370
>Glyma19g34370.2   sequence type=transcript   gene model=Glyma19g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAACACATTCCTATAAAATTGACGAGCTACCACATCTTTTTTCCATTCTTCAATCAATCTCTTTACCTAATTATATATATATATACACATCTTTCTCTCTTTCTCAGAAATCAGAATTGAGCAAGCGATTGGATTTGGATAACTGAAGGTGATCATCATTTTAGATATTATTATAAGAAGTTCATCAAATAATTGATCAGAAATATTCGATGGGGAGCTTTGAAACTGAGCTGAATCTTAAGGCCACAGAGTTGAGGTTGGGATTACCCGGCTGTGATGAAACTCATGACAAAAGTTCATCCAGTAGTGGATCTGTTGTTAGAAGCAACAAGAGATCTTCACCAGAACCCAGTGTGGAAGAGTCCAGGTGCAACTCTAATGGTTCTTCAGATTCTACCACCACAAGTGATCATGATGAAGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCAATTAGATCTTTTAGGAAGAACAGTCTGCAACAACAGAAGAAGGTGGAGCAGCAGGGTGATGGAAGTGGAACGTATTTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTGAAGGTTTACAATAGCTACCCAGAACTCCTCATGGCCTTGCAAAATTTGTTCAAGTGCACATTTGGTGAATATTCAGAGAGGGAAGGTTACAATGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAAGTAAGTTCCTTGTTCTATTTCTTTCTTTTTATATATAATTGAATAGTTTTTATTATATGCTCTCTTTATATTCTCCATCTCATGGAGCTGTTTTTGTTTATTAATTGCAGCATGTTTGTATCCTCCTGCAAGAGGCTGAAAATAATCAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTGTGACCAACAAAACTTGCAAAAGCAAATCAAATCAAAATAGTCACATGAGGTCTTCAAAGACAAATACCCTTTGTGTTGTGCAAGCAAATACATGGTGTTTATGAGAACTCATATATATATATATATATATATATATATATATATATATATATATTAGGAAAATAGATGGATATTATCTATGTATACATTATTTTTGCTTTATTAATTTCAGCAGAGGCGGCTTTGAGGTCTGCTTTCTAAATTATATGTAATCCTCTAAAAAAGAAAGAGAAAGAAAATATAAGAAAAGCTAATGCTATTTCAATTGTACAGATAAAAAATATAATAATAATAATAATCTCACTTTGTCTTAGCTAGATCTGTTTATGAGGAGAAGCAATTCTTTCGATAAAGCGATATATATCTTTCCATTTGATTTTAGCTTGTAACTAAGGCAAATTTGATTTGTTCATGTTTCGAAAATTTTATGTTAACTACTCGATTTGGGAATAATCAAGGAGATACGATTAAATATATATGATACGAAAAAAGGAAAAAGGTACTCTTTAACAGGCGTCAAATCTCCCATAAGAAGATTGAGAATTCCACCACTATTGTGAGTGGATGAGCACTACCATGCAGAGATATATCAAGTCAAACGACGATAATTCTTTGTCCCAAATTCCAATATATCAATTAGTTAACGGCATACTCTCTTTTTATTATAAGCTGTTAACGACATCCTAACTTCGAAAGCTAGAACCATCTTAATAATTTGAGCGTAAGACAGCAAAATTTCAAGATCTTAAACTTCTGCTACAATTTTGGATTTTCTTCATAGAACCATAGTTTCATAATCTTAGTTCCTATATATTTTCTTCATAGAACCATATATAGATTCAGAAACTTAGTTCCTATATATA

>Glyma19g34370.3   sequence type=transcript   gene model=Glyma19g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAACACATTCCTATAAAATTGACGAGCTACCACATCTTTTTTCCATTCTTCAATCAATCTCTTTACCTAATTATATATATATATACACATCTTTCTCTCTTTCTCAGAAATCAGAATTGAGCAAGCGATTGGATTTGGATAACTGAAGGTGATCATCATTTTAGATATTATTATAAGAAGTTCATCAAATAATTGATCAGAAATATTCGATGGGGAGCTTTGAAACTGAGCTGAATCTTAAGGCCACAGAGTTGAGGTTGGGATTACCCGGCTGTGATGAAACTCATGACAAAAGTTCATCCAGTAGTGGATCTGTTGTTAGAAGCAACAAGAGATCTTCACCAGAACCCAGTGTGGAAGAGTCCAGGTGCAACTCTAATGGTTCTTCAGATTCTACCACCACAAGTGATCATGATGAAGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCAATTAGATCTTTTAGGAAGAACAGTCTGCAACAACAGAAGAAGGTGGAGCAGCAGGGTGATGGAAGTGGAACGTATTTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTGAAGGTTTACAATAGCTACCCAGAACTCCTCATGGCCTTGCAAAATTTGTTCAAGTGCACATTTGAGAGGGAAGGTTACAATGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAAGTAAGTTCCTTGTTCTATTTCTTTCTTTTTATATATAATTGAATAGTTTTTATTATATGCTCTCTTTATATTCTCCATCTCATGGAGCTGTTTTTGTTTATTAATTGCAGCATGTTTGTATCCTCCTGCAAGAGGCTGAAAATAATCAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTGTGACCAACAAAACTTGCAAAAGCAAATCAAATCAAAATAGTCACATGAGGTCTTCAAAGACAAATACCCTTTGTGTTGTGCAAGCAAATACATGGTGTTTATGAGAACTCATATATATATATATATATATATATATATATATATATATATATATTAGGAAAATAGATGGATATTATCTATGTATACATTATTTTTGCTTTATTAATTTCAGCAGAGGCGGCTTTGAGGTCTGCTTTCTAAATTATATGTAATCCTCTAAAAAAGAAAGAGAAAGAAAATATAAGAAAAGCTAATGCTATTTCAATTGTACAGATAAAAAATATAATAATAATAATAATCTCACTTTGTCTTAGCTAGATCTGTTTATGAGGAGAAGCAATTCTTTCGATAAAGCGATATATATCTTTCCATTTGATTTTAGCTTGTAACTAAGGCAAATTTGATTTGTTCATGTTTCGAAAATTTTATGTTAACTACTCGATTTGGGAATAATCAAGGAGATACGATTAAATATATATGATACGAAAAAAGGAAAAAGGTACTCTTTAACAGGCGTCAAATCTCCCATAAGAAGATTGAGAATTCCACCACTATTGTGAGTGGATGAGCACTACCATGCAGAGATATATCAAGTCAAACGACGATAATTCTTTGTCCCAAATTCCAATATATCAATTAGTTAACGGCATACTCTCTTTTTATTATAAGCTGTTAACGACATCCTAACTTCGAAAGCTAGAACCATCTTAATAATTTGAGCGTAAGACAGCAAAATTTCAAGATCTTAAACTTCTGCTACAATTTTGGATTTTCTTCATAGAACCATAGTTTCATAATCTTAGTTCCTATATATTTTCTTCATAGAACCATATATAGATTCAGAAACTTAGTTCCTATATATA
Coding sequences of Glyma19g34370
>Glyma19g34370.1   sequence type=CDS   gene model=Glyma19g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCTTTGAAACTGAGCTGAATCTTAAGGCCACAGAGTTGAGGTTGGGATTACCCGGCTGTGATGAAACTCATGACAAAAGTTCATCCAGTAGTGGATCTGTTGTTAGAAGCAACAAGAGATCTTCACCAGAACCCAGTGTGGAAGAGTCCAGGTGCAACTCTAATGGTTCTTCAGATTCTACCACCACAAGTGATCATGATGAAGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCAATTAGATCTTTTAGGAAGAACAGTCTGCAACAACAGAAGAAGGTGGAGCAGCAGGGTGATGGAAGTGGAACGTATTTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTGAAGGTTTACAATAGCTACCCAGAACTCCTCATGGCCTTGCAAAATTTGTTCAAGTGCACATTTGGTGAATATTCAGAGAGGGAAGGTTACAATGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAACATGTTTGTATCCTCCTGCAAGAGGCTGAAAATAATCAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTTGTGA

>Glyma19g34370.2   sequence type=CDS   gene model=Glyma19g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCTTTGAAACTGAGCTGAATCTTAAGGCCACAGAGTTGAGGTTGGGATTACCCGGCTGTGATGAAACTCATGACAAAAGTTCATCCAGTAGTGGATCTGTTGTTAGAAGCAACAAGAGATCTTCACCAGAACCCAGTGTGGAAGAGTCCAGGTGCAACTCTAATGGTTCTTCAGATTCTACCACCACAAGTGATCATGATGAAGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCAATTAGATCTTTTAGGAAGAACAGTCTGCAACAACAGAAGAAGGTGGAGCAGCAGGGTGATGGAAGTGGAACGTATTTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTGAAGGTTTACAATAGCTACCCAGAACTCCTCATGGCCTTGCAAAATTTGTTCAAGTGCACATTTGGTGAATATTCAGAGAGGGAAGGTTACAATGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAAGTAA

>Glyma19g34370.3   sequence type=CDS   gene model=Glyma19g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGCTTTGAAACTGAGCTGAATCTTAAGGCCACAGAGTTGAGGTTGGGATTACCCGGCTGTGATGAAACTCATGACAAAAGTTCATCCAGTAGTGGATCTGTTGTTAGAAGCAACAAGAGATCTTCACCAGAACCCAGTGTGGAAGAGTCCAGGTGCAACTCTAATGGTTCTTCAGATTCTACCACCACAAGTGATCATGATGAAGACAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCAATTAGATCTTTTAGGAAGAACAGTCTGCAACAACAGAAGAAGGTGGAGCAGCAGGGTGATGGAAGTGGAACGTATTTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTGAAGGTTTACAATAGCTACCCAGAACTCCTCATGGCCTTGCAAAATTTGTTCAAGTGCACATTTGAGAGGGAAGGTTACAATGGATCTGAATACGCTCCTACTTATGAAGACAAGGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAAGTAA
Predicted protein sequences of Glyma19g34370
>Glyma19g34370.1   sequence type=predicted peptide   gene model=Glyma19g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSFETELNLKATELRLGLPGCDETHDKSSSSSGSVVRSNKRSSPEPSVEESRCNSNGSSDSTTTSDHDEDSVQPAKVQVVGWPPIRSFRKNSLQQQKKVEQQGDGSGTYLKVSMAGAPYLRKIDLKVYNSYPELLMALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLKIIKGSEAKGLGCL*

>Glyma19g34370.2   sequence type=predicted peptide   gene model=Glyma19g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSFETELNLKATELRLGLPGCDETHDKSSSSSGSVVRSNKRSSPEPSVEESRCNSNGSSDSTTTSDHDEDSVQPAKVQVVGWPPIRSFRKNSLQQQKKVEQQGDGSGTYLKVSMAGAPYLRKIDLKVYNSYPELLMALQNLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWK*

>Glyma19g34370.3   sequence type=predicted peptide   gene model=Glyma19g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSFETELNLKATELRLGLPGCDETHDKSSSSSGSVVRSNKRSSPEPSVEESRCNSNGSSDSTTTSDHDEDSVQPAKVQVVGWPPIRSFRKNSLQQQKKVEQQGDGSGTYLKVSMAGAPYLRKIDLKVYNSYPELLMALQNLFKCTFEREGYNGSEYAPTYEDKDGDWMLVGDVPWK*






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