Glyma19g34350 - SoyBase

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Report for Sequence Feature Glyma19g34350

Feature Type:	gene_model
Chromosome:	Gm19
Start:	41945384
stop:	41950833
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g34350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02610	AT	Annotation by Michelle Graham. TAIR10: Aldolase-type TIM barrel family protein \| chr4:1147662-1149217 FORWARD LENGTH=275	SoyBase	E_val: 7.00E-157	ISS
GO:0000162	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan biosynthetic process	SoyBase	N/A	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006568	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan metabolic process	SoyBase	N/A	ISS
GO:0006730	GO-bp	Annotation by Michelle Graham. GO Biological Process: one-carbon metabolic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004834	GO-mf	Annotation by Michelle Graham. GO Molecular Function: tryptophan synthase activity	SoyBase	N/A	ISS
GO:0033984	GO-mf	Annotation by Michelle Graham. GO Molecular Function: indole-3-glycerol-phosphate lyase activity	SoyBase	N/A	ISS
KOG4175	KOG	Tryptophan synthase alpha chain	JGI		ISS
PTHR10314	Panther	PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILY	JGI		ISS
PTHR10314:SF4	Panther	THREONINE SYNTHASE	JGI		ISS
PF00290	PFAM	Tryptophan synthase alpha chain	JGI		ISS
UniRef100_B9S4R8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Trytophan synthase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9S4R8_RICCO	SoyBase	E_val: 5.00E-162	ISS
UniRef100_I1N9L7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N9L7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g34350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g34350

Paralog	Evidence	Comments
Glyma03g31500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g34350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g160800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g34350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g34350

Limit To All Plant Sequences

>Glyma19g34350.2   sequence type=transcript   gene model=Glyma19g34350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACAACGTAGAAAGCTGAATAGTGAATACTAAATAATATTAGGGAAGGTTGGACTTGCAAGTTGCAACAGAGACAGAAAAAAGGACTCAATCACGAAGCAGAAGAAACCCAATAAGAAAGCTATAATCTCCGTGAAAAGATACACTCCGGTGGCCGCTATCAGGATCATGGACGCAGTGGGACTCTCTGCAACATTCACCAGATTGAAAAAAGAAGGAAAAGTGGCTTTCATCCCATATATCACTGCTGGTGATCCTGACCTTTCAACCACTGCAGAAGCACTGAAATTGCTTGATTCATGCGGGTCTGACATAATTGAGCTAGGCATTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTTAATGTGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGAGAAATTTATGTCCACCATAAGAGACACTGGCGTACATGGGCTTGTAGTGCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCACCAGACCGAATGAAAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGCGCATCTGTTAGTGGTTCTGTTCAGTCCCTTCTACAGGAAATTAAAGAGGCAACTACTAAACCTGTCGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGCGGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGACTGAAAGAACTGGAAGTTTTAACCCGCTCCTTAAAAGCAGCACTTCCTTGAAAAATAAGCTTTTAAGAGCTCGAACTTATAATAGTTGTTGTCATCATAGATATTGGATTCAATAAAATGTGGTTCAATTATGATTGGATTTCTCAGTTACTGAAATAAATGTCCCATATGAATTTCATCTCCTCACTCCATTGAGCTTTTTACAGATTGAGTCCCTAAATCATTTCGTCTCTTGTATGAGACCCTCCCTTGTCGGTAGCGATGCTGCCTATTGGTTAACTGAACACTGATTGAATCATCTACAACCGCAAGTGCATTTCTAC

Coding sequences of Glyma19g34350

Limit To All Plant Sequences

>Glyma19g34350.1   sequence type=CDS   gene model=Glyma19g34350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTGCCCTGAAGTCAAGTTGCTTATTGCAATTGAAGAAACCTGAGGCTGGTTTCAATGTTTGTTTTTCATCTAAGAAAGCTATAATCTCCGTGAAAAGATACACTCCGGTGGCCGCTATCAGGATCATGGACGCAGTGGGACTCTCTGCAACATTCACCAGATTGAAAAAAGAAGGAAAAGTGGCTTTCATCCCATATATCACTGCTGGTGATCCTGACCTTTCAACCACTGCAGAAGCACTGAAATTGCTTGATTCATGCGGGTCTGACATAATTGAGCTAGGCATTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTTAATGTGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGAGAAATTTATGTCCACCATAAGAGACACTGGCGTACATGGGCTTGTAGTGCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCACCAGACCGAATGAAAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGCGCATCTGTTAGTGGTTCTGTTCAGTCCCTTCTACAGGAAATTAAAGAGGCAACTACTAAACCTGTCGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGCGGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGACTGAAAGAACTGGAAGTTTTAACCCGCTCCTTAAAAGCAGCACTTCCTTGA

>Glyma19g34350.2   sequence type=CDS   gene model=Glyma19g34350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCAGTGGGACTCTCTGCAACATTCACCAGATTGAAAAAAGAAGGAAAAGTGGCTTTCATCCCATATATCACTGCTGGTGATCCTGACCTTTCAACCACTGCAGAAGCACTGAAATTGCTTGATTCATGCGGGTCTGACATAATTGAGCTAGGCATTCCATACTCTGATCCTTTGGCAGATGGTCCTGTTATCCAGGCTGCTGCTACAAGATCTTTAGCAAAGGGGACCAATTTTAATGTGATTATTGATATGTTGAAGGAGGTTGTTCCGCAACTGTCATGTCCAATTGCACTGTTTACATATTACAATCCAATACTGAAGCGTGGTACTGAGAAATTTATGTCCACCATAAGAGACACTGGCGTACATGGGCTTGTAGTGCCAGATGTCCCTCTGGAGGAGACGGAAACTTTAAGGACAGAAGCTAAGAAACATGGAATTGAACTGGTACTCCTCACAACACCCACCACTCCACCAGACCGAATGAAAGCCATTGTTGATGTGGCAGAAGGATTTGTGTATCTTGTGAGCTCAGTGGGGGTCACTGGAGCCCGCGCATCTGTTAGTGGTTCTGTTCAGTCCCTTCTACAGGAAATTAAAGAGGCAACTACTAAACCTGTCGCAGTTGGTTTTGGAATATCAAAACCTGAGCATGTGAAACAGGTAGCGGGATGGGGAGCTGATGGTGTGATTGTTGGCAGTGCTATAGTGAAGGTGCTTGGTGAGGCCAAATCTCCTCAAGAGGGACTGAAAGAACTGGAAGTTTTAACCCGCTCCTTAAAAGCAGCACTTCCTTGA

Predicted protein sequences of Glyma19g34350

Limit To All Plant Sequences

>Glyma19g34350.1   sequence type=predicted peptide   gene model=Glyma19g34350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALALKSSCLLQLKKPEAGFNVCFSSKKAIISVKRYTPVAAIRIMDAVGLSATFTRLKKEGKVAFIPYITAGDPDLSTTAEALKLLDSCGSDIIELGIPYSDPLADGPVIQAAATRSLAKGTNFNVIIDMLKEVVPQLSCPIALFTYYNPILKRGTEKFMSTIRDTGVHGLVVPDVPLEETETLRTEAKKHGIELVLLTTPTTPPDRMKAIVDVAEGFVYLVSSVGVTGARASVSGSVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAIVKVLGEAKSPQEGLKELEVLTRSLKAALP*

>Glyma19g34350.2   sequence type=predicted peptide   gene model=Glyma19g34350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAVGLSATFTRLKKEGKVAFIPYITAGDPDLSTTAEALKLLDSCGSDIIELGIPYSDPLADGPVIQAAATRSLAKGTNFNVIIDMLKEVVPQLSCPIALFTYYNPILKRGTEKFMSTIRDTGVHGLVVPDVPLEETETLRTEAKKHGIELVLLTTPTTPPDRMKAIVDVAEGFVYLVSSVGVTGARASVSGSVQSLLQEIKEATTKPVAVGFGISKPEHVKQVAGWGADGVIVGSAIVKVLGEAKSPQEGLKELEVLTRSLKAALP*

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