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Report for Sequence Feature Glyma19g34340

Feature Type:gene_model
Chromosome:Gm19
Start:41935301
stop:41942666
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g34340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54610AT Annotation by Michelle Graham. TAIR10: histone acetyltransferase of the GNAT family 1 | chr3:20213593-20217375 FORWARD LENGTH=568 SoyBaseE_val: 0ISS
GO:0000085GO-bp Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009410GO-bp Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009640GO-bp Annotation by Michelle Graham. GO Biological Process: photomorphogenesis SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0010015GO-bp Annotation by Michelle Graham. GO Biological Process: root morphogenesis SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0016571GO-bp Annotation by Michelle Graham. GO Biological Process: histone methylation SoyBaseN/AISS
GO:0016573GO-bp Annotation by Michelle Graham. GO Biological Process: histone acetylation SoyBaseN/AISS
GO:0016579GO-bp Annotation by Michelle Graham. GO Biological Process: protein deubiquitination SoyBaseN/AISS
GO:0043687GO-bp Annotation by Michelle Graham. GO Biological Process: post-translational protein modification SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048522GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process SoyBaseN/AISS
GO:0000123GO-cc Annotation by Michelle Graham. GO Cellular Compartment: histone acetyltransferase complex SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0004402GO-mf Annotation by Michelle Graham. GO Molecular Function: histone acetyltransferase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008080GO-mf Annotation by Michelle Graham. GO Molecular Function: N-acetyltransferase activity SoyBaseN/AISS
GO:0010484GO-mf Annotation by Michelle Graham. GO Molecular Function: H3 histone acetyltransferase activity SoyBaseN/AISS
PTHR22880Panther FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS JGI ISS
PTHR22880:SF6Panther HISTONE ACETYLTRANSFERASE GCN5 JGI ISS
PF00439PFAM Bromodomain JGI ISS
PF00583PFAM Acetyltransferase (GNAT) family JGI ISS
UniRef100_B9S4R6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Histone acetyltransferase gcn5, putative n=1 Tax=Ricinus communis RepID=B9S4R6_RICCO SoyBaseE_val: 0ISS
UniRef100_I1N9L6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9L6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g34340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g34340
ParalogEvidenceComments
Glyma03g31490 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g34340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g160700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g34340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g34340
>Glyma19g34340.1   sequence type=CDS   gene model=Glyma19g34340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCCCACGGCGGAGGACCCCTCCGTTCCCGCAGCTCCCAGTCCCCTTCTCCCTCCCACTCCGCCTCCGCCTCCGCCACCTCCTCCATCCACAAGCGCAAGCTCGCGTCTGAGGACCACGCGCCTCCCTTCCCTCCGTCCTCCTTCTCCGCCGACACCCGCGACGGCGCCCTCACCTCCAACGACGACCTCGAGAGCATCTCCGCCCGCGGCGCCGACTCCGACTCCGACGATGACTCCGAGGACGCCGTCGTCGACGACGACGAGGACGACTACGGCAACGACAACGACTCCTCCATTCGGACCTTCACCGCCTCCAGGCTCAGCAACCCTCCCTCCGCTCCCCGCAACACCAAGCTCAAGACCGAAATCTCCACCGTCAAAATTGAGAATTCTGACGGCGCCAAAGACGCCGTAGTCGGAGCTTGTGCCGCCGCTTCCGCGGGATCGGTCCCCGGGATTGTGGTTAAGGAGGACCCGACTAAGATTTTTACTGATAATTTGCAAACGAGTGGGGCTTACACTGCCAGGGAAGAGAGTCTCAAGAAAGAGGAGGAAGCAGGAAGGCTCAAATTTGTATGCCTATCAAACGATGGTGTTGATGAGCATATGGTTTGGTTGATTGGATTGAAGAATATATTTGCTAGGCAGCTTCCCAATATGCCCAAGGAGTACATTGTCCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGTAATCATGTTGTTGGAGGCATTACATATCGCCCATATGCTAGTCAGAAGTTTGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTAAAGGGTTATGGTACCAGATTGATGAATCACTTAAAACAATATGCACGGGATATGGATGGGCTGACACATTTTCTCACATACGCTGACAATAATGCTGTTGGCTATTTTATCAAGCAGGGATTTACAAAAGAGATTCACTTGGAGAAAGATCGATGGCAAGGTTATATAAAGGATTATGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAACTCCCGTACACTGATTTGTCAACTATGATCCGTCGTCAAAGGCAGGCAATTGATGAAAAAATCAGAGAGCTATCAAACTGTCACATCGTTTATGCTGGAATTGATTTTCAGAAGAAAGAAGCTGGTATTCCTAAAAAAATTATTGATGACATCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGATTCAGAACTTTAAATGTTTCTACTGACAATGCTACTAATCAGAAACATTTGAATGGGTTTATGCGTTCACTTCTAAAGTCAATGTTCGATCATGCTGATGCTTGGCCATTCAAGGAGCCAGTTGATGCTCGGGATGTCCCTGATTATTATGACATCATCAAAGATCCAATGGATTTGAAGACAATGTCTAAGAGGGTGGATTCAGAGCAATATTATGTAACATTTGAGATGTTTGTTGCGGATGCCAGAAGAATGTTTGCGAATGCACGCACCTATAATTCTCCAGAAACCATTTATTACAAATGTTCTACAAGGTTAGAAGCCCACTTTCAAAGCAAAGTGCAAGCGGGCCTCCAGCCTGGTACCAAAATTCAGTAG
Predicted protein sequences of Glyma19g34340
>Glyma19g34340.1   sequence type=predicted peptide   gene model=Glyma19g34340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESHGGGPLRSRSSQSPSPSHSASASATSSIHKRKLASEDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDSDDDSEDAVVDDDEDDYGNDNDSSIRTFTASRLSNPPSAPRNTKLKTEISTVKIENSDGAKDAVVGACAAASAGSVPGIVVKEDPTKIFTDNLQTSGAYTAREESLKKEEEAGRLKFVCLSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQKFGEIAFCAITADEQVKGYGTRLMNHLKQYARDMDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKKEAGIPKKIIDDIPGLREAGWTPDQWGHSRFRTLNVSTDNATNQKHLNGFMRSLLKSMFDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVDSEQYYVTFEMFVADARRMFANARTYNSPETIYYKCSTRLEAHFQSKVQAGLQPGTKIQ*






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