Glyma19g34220 - SoyBase

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Report for Sequence Feature Glyma19g34220

Feature Type:	gene_model
Chromosome:	Gm19
Start:	41841913
stop:	41846498
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g34220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G02670	AT	Annotation by Michelle Graham. TAIR10: indeterminate(ID)-domain 12 \| chr4:1176190-1178489 REVERSE LENGTH=402	SoyBase	E_val: 9.00E-127	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG3576	KOG	Ovo and related transcription factors	JGI		ISS
PTHR10593	Panther	SERINE/THREONINE-PROTEIN KINASE RIO	JGI		ISS
UniRef100_G7ICR7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein-like protein n=1 Tax=Medicago truncatula RepID=G7ICR7_MEDTR	SoyBase	E_val: 3.00E-179	ISS
UniRef100_UPI000233F15B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F15B related cluster n=1 Tax=unknown RepID=UPI000233F15B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g34220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g34220

Paralog	Evidence	Comments
Glyma03g31390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g34220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g159600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g34220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g34220

Limit To All Plant Sequences

>Glyma19g34220.2   sequence type=CDS   gene model=Glyma19g34220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTCCCCACTGCTATTTCCAATTCAACTTCTTTGTCTGAGGATGCCAGTGTTTCTTCTGGGACAAAAGTTCAGGACTTGGGAGGACTCAATCCCTGGGTCTCAAACATTTCTCCTCAACAACAACAACAGCCTCAAAAGATCAAGAAAAAGAGAAGCCTACCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTTTGGCCACTAACAGATTTGTTTGTGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCATAGGAGGGGCCACAACCTCCCTTGGAAGCTGAAGCAAAGGAGCAGCAAAGAGGTGAAAAAGAAAGCCTACGTTTGCCCTGAACCTTCATGCGTTCACCACGACCCCTCAAGAGCCCTGGGGGATCTTACAGGAATCAAGAAACACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATACGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGTACTAGAGAATATAGATGTGACTGTGGAATCCTTTTTTCCAGGAAGGATAGTTTCATAACACACAGGGCGTTCTGTGATGCATTGGCGGAAGAAAGTGCTAGACTATCAGCAAATCAATTAGCTGCCGTCGCCACCACCACATCAAATCCATTCCAATCTCTCCATCTTTTCCAAACCCAACAACAGAACTTCCAAAACCACCAAATCAGCAGTTTCAACCAATGGGACTCATCTCAAGAAAACCCTAACCCTACCAATATTATTGCCACTACTTCCCTCCACATCAAGCCAGAGTCTCAAACCTTCCACAACCCCACCCTCTCTTCACTTCTCCAACAGCAACAACCTACCAACAACAAGGGCATGATAGCCTCAACCTTCGGGAACCTCCACGTGGCCACGCAAGCATCTGCCACGTCAGCATACATGTCAGCCACTGCGCTGCTTCAAAAGGCTGCAACCGTTGGAGCCGCTGCCATCACGGGCCCTGTTGGGCCACAACAGCGCGTGACGGGTCACGTGAATCACGTGACCCACCACCTCGGCTCGGGCGAGTTCGGAATCGGAACAGTGAGTCAACTCGACCCAGTGGTGGCGGTGCCAGATAACAACTACATGAGAACAACGTTCAAGGGTGACCGTCTCACAAGGGACTTTCTGGGTCTCACGGCAGATGCTACCGGCGGCGCGGTTGACGTTAGCACCAACGTGAAGGATATGTTAACGTTCGCGGGGGGCGTAGAGTACCACCAACCGCACCGTCAGCATCACCACCACGCGCTTCTGAAGCCCCAACAAGGCTTCGGTTTCCTTGGGACAGCCACTGCCCCCGAGACGTGGGGGAATTGTTAG

Predicted protein sequences of Glyma19g34220

Limit To All Plant Sequences

>Glyma19g34220.2   sequence type=predicted peptide   gene model=Glyma19g34220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFPTAISNSTSLSEDASVSSGTKVQDLGGLNPWVSNISPQQQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKKAYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGILFSRKDSFITHRAFCDALAEESARLSANQLAAVATTTSNPFQSLHLFQTQQQNFQNHQISSFNQWDSSQENPNPTNIIATTSLHIKPESQTFHNPTLSSLLQQQQPTNNKGMIASTFGNLHVATQASATSAYMSATALLQKAATVGAAAITGPVGPQQRVTGHVNHVTHHLGSGEFGIGTVSQLDPVVAVPDNNYMRTTFKGDRLTRDFLGLTADATGGAVDVSTNVKDMLTFAGGVEYHQPHRQHHHHALLKPQQGFGFLGTATAPETWGNC*

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