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Report for Sequence Feature Glyma19g34200

Feature Type:gene_model
Chromosome:Gm19
Start:41813034
stop:41822868
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g34200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02680AT Annotation by Michelle Graham. TAIR10: ETO1-like 1 | chr4:1181202-1184328 REVERSE LENGTH=888 SoyBaseE_val: 0ISS
GO:0000096GO-bp Annotation by Michelle Graham. GO Biological Process: sulfur amino acid metabolic process SoyBaseN/AISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0007267GO-bp Annotation by Michelle Graham. GO Biological Process: cell-cell signaling SoyBaseN/AISS
GO:0008652GO-bp Annotation by Michelle Graham. GO Biological Process: cellular amino acid biosynthetic process SoyBaseN/AISS
GO:0009069GO-bp Annotation by Michelle Graham. GO Biological Process: serine family amino acid metabolic process SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0009616GO-bp Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing SoyBaseN/AISS
GO:0009855GO-bp Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010050GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative phase change SoyBaseN/AISS
GO:0010073GO-bp Annotation by Michelle Graham. GO Biological Process: meristem maintenance SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0010364GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of ethylene biosynthetic process SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0042545GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall modification SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PTHR23083Panther O-LINKED N-ACETYLGLUCOSAMINE TRANSFERASE, OGT JGI ISS
PTHR23083:SF141Panther SUBFAMILY NOT NAMED JGI ISS
PF00515PFAM Tetratricopeptide repeat JGI ISS
UniRef100_G7IDJ7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ethylene overproducer-like protein n=1 Tax=Medicago truncatula RepID=G7IDJ7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1N9K4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9K4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g34200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g34200
ParalogEvidenceComments
Glyma03g31370 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g34200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g159400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g34200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g34200
>Glyma19g34200.1   sequence type=CDS   gene model=Glyma19g34200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGAGTTTCTTCCCTGCTGAATCCTGTAAAGAGGCTCACCCAAATGCTTTGAATCCTCAGTCTTGGCTTCATATTGAAAGAGGGAAACTTCCCAAGTTGTCATCACACCCCTCATCTGCCTCAATTGAATCTCTGATCAAGGTCCCACAGCCAGCTATACTGCCTTTCTTTAAGCCTGTTGATTATGTGGAAGTTTTAGCTCGAATCCATGAAGAACTCGAGTCTTGTCCTCCGCAAGAGAGATCAAACTTGTTTTTGTTACAATACCAGGTCTTCAGGGGCCTTGGGGAAGTTAAATTGATGCGTAGAAGCCTCCAGGGAGCTTGGCAGAGAGCTCACACTGTTCATGAGAAGATTATATTTGGGGCATGGCTGAAATATGAGAAGCAAGAGGAAGAGCTAATGGCTGACTTGCTTGCAGCTTGTGGTAAATGTGCGAAGGAGTTTGCACCTGTAGATATAGCATTTCATCTTCCATTTGATGTAAATGCAAGTTCTGAGGGGAGAACGACCAATGAGAACCGCATTTCTCAAAATGTTACTTTTACGATTGGAAGTGAAAAGATAGTTTGTGATAGACAAAAAATTTCAGAACTTTCAGCACCATTTCATGCAATGCTCAAGGGGCATTTCAGTGAATCACTCTCTGAGACAATAGATTTGTCAGAAAACAATATCTCTCCCTCAGGTATGAAGGCAATAAGTGATTTCAGTTTGAATGGCAGTTTAATTGAGGTCCCTCCAAATCTTTTGTTGGAGATATTAGTTTTTGCAAACAAGTATTGTTGTGAAAGACTTAAAGATGCTTGTGATAGAAGACTTGCATCCTTAGTTTCCTCCAAAGAAGATGCTGTGGAGCTCATGGAATATGCTCTTGATGAACATTCAAGTGTCCTTGCTGCATCTTGTTTACAAGTCCTTTTGCGTGACCTTCCAAACTGTATGAATGACAATCGGGTGGTGGAGATATTTGTTCATGCTAATAAGCAGCAGCTAGAAGTCATGGTTGGGCCAGGTATATTTGCACTTTTCTGTTTCTTAAGTGAAGTTTCTATGAACCTTAATTCTAGTTCAGACACAACAGCTCATTTCCTGGAACGGTTAGTTGAGTTTGCTGAGAATGGCAAGCAGAGACTTCTAGCTTTACATCAATTGGGATGTGTAAGACTCTTAAGGAAAGAATATGATGAAGCACGTTGTCTTTTTGAAGGGGCTGTAAATGCAGGCCATATGTATTCTGTGGCAGGTTTAGCTAGACTGGACTATATAAAGGGTGACAAGCTGCTATCTTATGGGCAACTTAGCTCAGTCATTTCATCTGTTACTTCACTTGGATGGATGTATCAGGAAAGATCACTATACTGTGACGGTGACAAAAGGTGGGAGGACCTTGAGAAAGCAAGTAATTTGGATCCTACTCTTATATATCCTTACATGTACAGAGCTGCCACTTTAATGAGGACACAGAATGCTCATGCTGCACTAGCAGAAATCAATCGGATTCTTGGGTTCAAACTTTCACTAGAATGCTTGGAAATACGATTTTTTATCCACCTTTCTCTTGAGGACTATAAAGCAGCTCTATGTGATGTTCAAACAATTCTTACTCTGCGTTCAGATTATAGAATGTTTGAGGGGCGTGTTGCTGCATCCCAACTCTGTACTCTTGTGCGTGAGCATGTTGAACGTTGGACAACTGCAGATTGTTGGGCACGATTATATGATTGTTGGTCTGCAGTTGATGATATTGGATCTCTATCTGTTATCTACCAGATGCTTGAATCTGATGCAGCAAAAGGTATTCTATACTTCAGACAGTCATTGCTTCTCCTAAGGTTGAACTGTCCCGAGGCTGCTATGCGTAGTTTACTGTTAGCTCGGCAACATGCATCAAGTGAGCATGAACGACTTGTATATGAGGGGTGGATCTTATATGATACAGGTCATTATGAGGAAGGGCTCCAGAAAGCTGAAGAGTCTATTGACATCAAAAGATCTTTTGAGGCCTTTTTCCTGAAGGCCTATGCATTGGCTGACTCTAGTATAGATCCATCATGTTCACCAACTGTTATTTCACTTCTGGAAGATGCCTTGAAGTGTCCTTCAGATAATCTGCGCAAAGGTCAGGCACTTAACAATCTTGGAAGTGTTTATGTTGACTGTGGTAAATTGGACTTGGCTGCTGATTGTTATATCAATGCTCTTAAAATCCGACACACCCGAGCTCATCATGGTCTTGCTCGCGTTCATTGTCTGAAAAATGATAAGGCTGCAGCTTATATGGAAATGACCGAACTTATTAAGAAGGCAAAAAACAATGCATCTGCTTATGAGAAGAGGTCTGAGTACTGTGATCGTGAACAAGCAAAGGCAGATCTGGAGATGGTCACTAGATTAGATCCACTTCGGGCCTATCCTTATAGATATCGTGCTGCAGTATTGATGGACAACCACAAGGAAGAGGAAGCCATTGCAGAACTCTCTAGAGCTATTGCGTTTAAAGCTGATTTGCACCTCTTGCATCTACGTGCAGCATTCCATGAACATAAAGAGGACGTCTTAGGTGCGCTAAGAGACTGTCGTGCTGCTCTCTCAGTTGATCCAAACCACCAAGAAATGCTGGAACTTCATAGTCGAGTCAATAGACACGAGCCATGA
Predicted protein sequences of Glyma19g34200
>Glyma19g34200.1   sequence type=predicted peptide   gene model=Glyma19g34200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRSFFPAESCKEAHPNALNPQSWLHIERGKLPKLSSHPSSASIESLIKVPQPAILPFFKPVDYVEVLARIHEELESCPPQERSNLFLLQYQVFRGLGEVKLMRRSLQGAWQRAHTVHEKIIFGAWLKYEKQEEELMADLLAACGKCAKEFAPVDIAFHLPFDVNASSEGRTTNENRISQNVTFTIGSEKIVCDRQKISELSAPFHAMLKGHFSESLSETIDLSENNISPSGMKAISDFSLNGSLIEVPPNLLLEILVFANKYCCERLKDACDRRLASLVSSKEDAVELMEYALDEHSSVLAASCLQVLLRDLPNCMNDNRVVEIFVHANKQQLEVMVGPGIFALFCFLSEVSMNLNSSSDTTAHFLERLVEFAENGKQRLLALHQLGCVRLLRKEYDEARCLFEGAVNAGHMYSVAGLARLDYIKGDKLLSYGQLSSVISSVTSLGWMYQERSLYCDGDKRWEDLEKASNLDPTLIYPYMYRAATLMRTQNAHAALAEINRILGFKLSLECLEIRFFIHLSLEDYKAALCDVQTILTLRSDYRMFEGRVAASQLCTLVREHVERWTTADCWARLYDCWSAVDDIGSLSVIYQMLESDAAKGILYFRQSLLLLRLNCPEAAMRSLLLARQHASSEHERLVYEGWILYDTGHYEEGLQKAEESIDIKRSFEAFFLKAYALADSSIDPSCSPTVISLLEDALKCPSDNLRKGQALNNLGSVYVDCGKLDLAADCYINALKIRHTRAHHGLARVHCLKNDKAAAYMEMTELIKKAKNNASAYEKRSEYCDREQAKADLEMVTRLDPLRAYPYRYRAAVLMDNHKEEEAIAELSRAIAFKADLHLLHLRAAFHEHKEDVLGALRDCRAALSVDPNHQEMLELHSRVNRHEP*






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