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Report for Sequence Feature Glyma19g34080

Feature Type:gene_model
Chromosome:Gm19
Start:41693335
stop:41699459
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G63220AT Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr3:23357540-23358577 REVERSE LENGTH=345 SoyBaseE_val: 0ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009062GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PTHR24414Panther FAMILY NOT NAMED JGI ISS
PTHR24414:SF184Panther JGI ISS
PF01344PFAM Kelch motif JGI ISS
UniRef100_A9PAC1UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=A9PAC1_POPTR SoyBaseE_val: 0ISS
UniRef100_I1N9J4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9J4_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma03g31230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g158300 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma19g34080.1   sequence type=CDS   gene model=Glyma19g34080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGGACTGATCGAAGGACTTCCTGACGCTGTTGCAATTAGGTGCCTTGCACGTGTTCCCTTCTACCTCCACCCAGTGTTAGAGCTTGTCTCTCGATCTTGGCAAGCAGCTATTTGTAGCCCTGAACTATTTAAAGCTCGGCAGGAGGTTGGTTCGACTGAGGATCTGTTATGTGTCTGTGCTTTTGATCCAGAGAACTTATGGCAGCTGTATGACCCTATGCAAGATCTCTGGATTACACTTCCTGTTCTTCCCTCAAAGATCAGGCACCTTTCCAACTTTGGCGCTGTTTCTACTGCTGGAAAGTTGTTTGTGATTGGTGGTGGAAGTGATGCTGTTGATCCTTTGACTGGTGACCAAGATGGTTGTTTTGCAACAGATGAAGTTTGGTCATATGACCCTGTAGCCCGGGAGTGGGCCTCTCGTGCATCAATGCTCGTTCCCCGTTCTATGTTTGCATGCTGTGTTTTGAATGGAAAAATTGTTGTGGCTGGGGGCTTCACTAGCTGCAGAAAATCAATATCTCAATCAGAAATGTATGATCCTGACAAGGATATTTGGATTCCAATGCCTGATCTTCATCGCACTCATAATTCGGCCTGTTCAGGAGTAGTGATTGGTGGAAAGGTGCATGTGCTGCACAAGGATATGTCAACAGTGCAAGTTTTAGACAATGCAGGGCCCGGGTGGACTGTCGAGGAATGTGTGTGGCTCCAAGGTCAGATGGCAGTTGTCGGTGATGCACTTTATGTGATGAGCCATGGATTAATCTTCAAGCAGGACAAAGAAGTGAGAAAGGTTGTAGGTTCAGCATCTGAGTTTCGAAAGAGAATTGGCTTTGCAATGACTGGACTAGGTGATGACTTATACGTGATTGGAGGCTTCATTGGACCAGATAGATGGAATTGGGACATTAAGCCATTATCCGAAGTTGATGTTCTCACACTTGGAAGTGAGAGACCAACTTGGCGCCAAGCAGCTCGGATGACACGGTGTCATGGTACTATTCTTGGTTGTACGCTGCTGAGAATTTAG

>Glyma19g34080.1   sequence type=predicted peptide   gene model=Glyma19g34080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGLIEGLPDAVAIRCLARVPFYLHPVLELVSRSWQAAICSPELFKARQEVGSTEDLLCVCAFDPENLWQLYDPMQDLWITLPVLPSKIRHLSNFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATDEVWSYDPVAREWASRASMLVPRSMFACCVLNGKIVVAGGFTSCRKSISQSEMYDPDKDIWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAGPGWTVEECVWLQGQMAVVGDALYVMSHGLIFKQDKEVRKVVGSASEFRKRIGFAMTGLGDDLYVIGGFIGPDRWNWDIKPLSEVDVLTLGSERPTWRQAARMTRCHGTILGCTLLRI*







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