Report for Sequence Feature Glyma19g34080
Feature Type: gene_model
Chromosome: Gm19
Start: 41693335
stop: 41699459
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g34080
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G63220 AT
Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein | chr3:23357540-23358577 REVERSE LENGTH=345
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009062 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PTHR24414 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24414:SF184 Panther
JGI ISS
PF01344 PFAM
Kelch motif
JGI ISS
UniRef100_A9PAC1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=A9PAC1_POPTR
SoyBase E_val: 0 ISS
UniRef100_I1N9J4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9J4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g34080
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma19g34080
Paralog Evidence Comments
Glyma03g31230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g34080 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g158300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g34080
Coding sequences of Glyma19g34080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g34080.1 sequence type=CDS gene model=Glyma19g34080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCTGGACTGATCGAAGGACTTCCTGACGCTGTTGCAATTAGGTGCCTTGCACGTGTTCCCTTCTACCTCCACCCAGTGTTAGAGCTTGTCTCTCGATCTTGGCAAGCAGCTATTTGTAGCCCTGAACTATTTAAAGCTCGGCAGGAGGTTGGTTCGACTGAGGATCTGTTATGTGTCTGTGCTTTTGATCCAGAGAACTTATGGCAGCTGTATGACCCTATGCAAGATCTCTGGATTACACTTCCTGTTCTTCCCTCAAAGATCAGGCACCTTTCCAACTTTGGCGCTGTTTCTACTGCTGGAAAGTTGTTTGTGATTGGTGGTGGAAGTGATGCTGTTGATCCTTTGACTGGTGACCAAGATGGTTGTTTTGCAACAGATGAAGTTTGGTCATATGACCCTGTAGCCCGGGAGTGGGCCTCTCGTGCATCAATGCTCGTTCCCCGTTCTATGTTTGCATGCTGTGTTTTGAATGGAAAAATTGTTGTGGCTGGGGGCTTCACTAGCTGCAGAAAATCAATATCTCAATCAGAAATGTATGATCCTGACAAGGATATTTGGATTCCAATGCCTGATCTTCATCGCACTCATAATTCGGCCTGTTCAGGAGTAGTGATTGGTGGAAAGGTGCATGTGCTGCACAAGGATATGTCAACAGTGCAAGTTTTAGACAATGCAGGGCCCGGGTGGACTGTCGAGGAATGTGTGTGGCTCCAAGGTCAGATGGCAGTTGTCGGTGATGCACTTTATGTGATGAGCCATGGATTAATCTTCAAGCAGGACAAAGAAGTGAGAAAGGTTGTAGGTTCAGCATCTGAGTTTCGAAAGAGAATTGGCTTTGCAATGACTGGACTAGGTGATGACTTATACGTGATTGGAGGCTTCATTGGACCAGATAGATGGAATTGGGACATTAAGCCATTATCCGAAGTTGATGTTCTCACACTTGGAAGTGAGAGACCAACTTGGCGCCAAGCAGCTCGGATGACACGGTGTCATGGTACTATTCTTGGTTGTACGCTGCTGAGAATTTAG
Predicted protein sequences of Glyma19g34080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g34080.1 sequence type=predicted peptide gene model=Glyma19g34080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSGLIEGLPDAVAIRCLARVPFYLHPVLELVSRSWQAAICSPELFKARQEVGSTEDLLCVCAFDPENLWQLYDPMQDLWITLPVLPSKIRHLSNFGAVSTAGKLFVIGGGSDAVDPLTGDQDGCFATDEVWSYDPVAREWASRASMLVPRSMFACCVLNGKIVVAGGFTSCRKSISQSEMYDPDKDIWIPMPDLHRTHNSACSGVVIGGKVHVLHKDMSTVQVLDNAGPGWTVEECVWLQGQMAVVGDALYVMSHGLIFKQDKEVRKVVGSASEFRKRIGFAMTGLGDDLYVIGGFIGPDRWNWDIKPLSEVDVLTLGSERPTWRQAARMTRCHGTILGCTLLRI*