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Report for Sequence Feature Glyma19g33951

Feature Type:gene_model
Chromosome:Gm19
Start:41563350
stop:41574632
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g33951
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G02780AT Annotation by Michelle Graham. TAIR10: Terpenoid cyclases/Protein prenyltransferases superfamily protein | chr4:1237881-1244766 REVERSE LENGTH=802 SoyBaseE_val: 0ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0009686GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process SoyBaseN/AISS
GO:0009740GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0000287GO-mf Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding SoyBaseN/AISS
GO:0009905GO-mf Annotation by Michelle Graham. GO Molecular Function: ent-copalyl diphosphate synthase activity SoyBaseN/AISS
GO:0010333GO-mf Annotation by Michelle Graham. GO Molecular Function: terpene synthase activity SoyBaseN/AISS
GO:0016829GO-mf Annotation by Michelle Graham. GO Molecular Function: lyase activity SoyBaseN/AISS
PF01397PFAM Terpene synthase, N-terminal domain JGI ISS
PF03936PFAM Terpene synthase family, metal binding domain JGI ISS
UniRef100_O04408UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ent-copalyl diphosphate synthase, chloroplastic n=1 Tax=Pisum sativum RepID=KSA_PEA SoyBaseE_val: 0ISS
UniRef100_UPI0002336C4CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002336C4C related cluster n=1 Tax=unknown RepID=UPI0002336C4C SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g33951
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g33951 not represented in the dataset
Glyma19g33951 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33951
ParalogEvidenceComments
Glyma03g31111 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33951 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g157000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g33951
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g33951
>Glyma19g33951.1   sequence type=CDS   gene model=Glyma19g33951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTCACTTCTCCACTCACTGCCACCTTCCCTCTTTCTCTTCTTCTAACCATTTCCCTTTTTCATCTTCTTCTTCTATCTCTCTTCACCACTTCTCCAAATCCTCTCTGGGTGCCGTGTTGTCCGAGACTAACGACAAACAAGAGATAAGATGCAGAGCAATATCCAAACCACGAACACAAGAATATTCAGACATATTTCAGGGTAGTCTAGCAACGTTAAAGTTTCGTGAGATTAATGTGGAAGATGACATAGAAGAGGAGCAAGACATCGGGGTTTTTGTGGCAAATGAGATCAAGAAGAGAGTGGACACTATCAAATCAATATTGGGTTCCATGGAAGATGGAGAGATAACAGTATCTGCTTATGACACTGCTTGGGTTGCTCTGATAGAAGATGTTCATGGAAGTGGTGCTCCTCAATTTCCATCGAGTCTAGAATGGATAGCGAAAAATCAACACCCTGATGGTTCATGGGGTGATAAGGAATTATTCTCAGCCCATGATCGGATTATTAACACGTTGGCTTGTGTTATTGCATTAAAATCATGGCATATGCACCCTGAAAAGTGTGAGAAAGGAATGACATTTTTTAAGGAGAATCTTAACCAGCTTCAGAATGAGAATGTGGAGCATATGCCAATTGGGTTTGAAGTAGCTTTTCCATCACTTCTTGACATGGCTCGTGGCTTGAACATTGAAGTGCCGGACAATTCCCCAATCCTGAACAAAATCTTCGCAATGAGAAACGTAAAACTCACAAGAATACCAAAAGCGATGATGCATAAAGTGCCCACAAGTCTGCTTCATAGCTTGGAAGGGATGTCAGGCCTTGACTGGAAAGAGCTTCTAAAACTGCAGTCTCAAGACGGGTCCTTCTTGTTTTCTCCGTCCTCCACTGCCTTTGCTCTCATGCAAACTAAAGACCAAAATTGCCACAATTACTTGAATAAAGTGGTCAAGAGGTTCAATGGGGGAGTTCCGAACGTGTACCCAGTGGATTTGTTCGAACATATTTGGGTGGTTGATAGGCTTGAACGCCTCGGAATATCTCAGTATTTTCAGCAAGAGATCAAGGACTGTTTGAATTATGTTCACAGATATTGGACTGAAAAGGGTATTTGTTGGGCAAGAAATTCAAATGTTCAAGACATTGATGACACGGCAATGGGTTTCAGATTACTAAGATTACACGGCTATCAAGTTTCAGCCGATGTGTTCAAGAACTTTGAGAGAAATGGTGAATTTTTCTGCTTCACGGGGCAGACTACACAAGCCGTGACAGGAATGTTTAATCTATATAGGGCCACACAAGTAATGTTCCCGGGAGAGAAAATTCTTGAGCATGGGAAGCATTTCTCTGCCAAATTTTTGAGGGATAAGAGAGCAGCAAATGAGCTAGTAGATAAATGGATCATAATGAAGAACCTGGCAGAAGAGGTTGCGTACGCTTTGGACGTACCATGGTATGCAAGCCTACCTCGAGTGGAGACAAGATTCTACATTGATCAATACGGTGGTGAGAGTGACGTGTGGATAGGCAAAACCCTTTACAGGATGGCCTATGTGAACAACAATAACTATCTCGAGCTTGCTAAATTAGATTACAACAATTGCCAGACACTGCATCTAATAGAGTGGGGGAGAATTCAGAAGTGGTACTCAGAATCTAGGTTGGGAGAGTTTGGATTGAACAGAAGAACTCTTCTGTTGGCCTATTTTCTGGCAGCAGCAAGCATATTTGAGCCTGAAAAGTCTCATGTGAGACTAGCGTGGGCCAAAACCAGTGTCTTACTTGAGACCATAACATCCTATGTTAGTGATGCAGAAATGAGGAAAGATTTCATGAAAAAATTCAGTGACTGCATTAACAGGCGAGACTACTCCATGGGCTGGAGGTTGAACAGGAACAGAATAGGACATGGACTGGCTGAGGCTTTGGTTGCCACCATAGATCAAATCTCGTGGGATATACTCGTGTCTCACGGTCACGAAATTGGATATCACATGCATCGCAGTTGGGAAAAGTGGCTTTCAAGTTGGCATCGCGAAGGAGACAAATGTGAAGGACAAGCTGAGCTTTTGGCGCAGATAATAAACCTATGTGACGGGCATTGGATTTCCGAGGATCAAGTGTTCGATCCACAATATCAGAGTCTCCTTCAACTCACTAACACACTCTGCAATAGACTCCGTTGCCACCAAAAGGACAAGGAACTCGAGAGCGGCAACTGCGGCACGAATGTAAACAGCATGATCACCCAAGAAGAAGAGTCAAAAATGCAAGAACTCGTGCAATTGGTGTACCAAAAATCTCCAACTGGCATTGATTTCAATATCAAGAATACTTTCCTCACAGTGGCCAAGAGTTTTTACTATACAGCTTTCTGTGATTCAAGGACCGTCAACTTCCATATTGCCAAAGTTCTGTTTGATAAAGTCGTTTAA
Predicted protein sequences of Glyma19g33951
>Glyma19g33951.1   sequence type=predicted peptide   gene model=Glyma19g33951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASHFSTHCHLPSFSSSNHFPFSSSSSISLHHFSKSSLGAVLSETNDKQEIRCRAISKPRTQEYSDIFQGSLATLKFREINVEDDIEEEQDIGVFVANEIKKRVDTIKSILGSMEDGEITVSAYDTAWVALIEDVHGSGAPQFPSSLEWIAKNQHPDGSWGDKELFSAHDRIINTLACVIALKSWHMHPEKCEKGMTFFKENLNQLQNENVEHMPIGFEVAFPSLLDMARGLNIEVPDNSPILNKIFAMRNVKLTRIPKAMMHKVPTSLLHSLEGMSGLDWKELLKLQSQDGSFLFSPSSTAFALMQTKDQNCHNYLNKVVKRFNGGVPNVYPVDLFEHIWVVDRLERLGISQYFQQEIKDCLNYVHRYWTEKGICWARNSNVQDIDDTAMGFRLLRLHGYQVSADVFKNFERNGEFFCFTGQTTQAVTGMFNLYRATQVMFPGEKILEHGKHFSAKFLRDKRAANELVDKWIIMKNLAEEVAYALDVPWYASLPRVETRFYIDQYGGESDVWIGKTLYRMAYVNNNNYLELAKLDYNNCQTLHLIEWGRIQKWYSESRLGEFGLNRRTLLLAYFLAAASIFEPEKSHVRLAWAKTSVLLETITSYVSDAEMRKDFMKKFSDCINRRDYSMGWRLNRNRIGHGLAEALVATIDQISWDILVSHGHEIGYHMHRSWEKWLSSWHREGDKCEGQAELLAQIINLCDGHWISEDQVFDPQYQSLLQLTNTLCNRLRCHQKDKELESGNCGTNVNSMITQEEESKMQELVQLVYQKSPTGIDFNIKNTFLTVAKSFYYTAFCDSRTVNFHIAKVLFDKVV*






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