Report for Sequence Feature Glyma19g33880
Feature Type: gene_model
Chromosome: Gm19
Start: 41502048
stop: 41507966
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma19g33880
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G19330 AT
Annotation by Michelle Graham. TAIR10: ARM repeat protein interacting with ABF2 | chr5:6508095-6512701 REVERSE LENGTH=710
SoyBase E_val: 0 ISS
GO:0000956 GO-bp
Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process
SoyBase N/A ISS
GO:0009651 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salt stress
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0010187 GO-bp
Annotation by Michelle Graham. GO Biological Process: negative regulation of seed germination
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
PTHR23315 Panther
BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING
JGI ISS
PF00514 PFAM
Armadillo/beta-catenin-like repeat
JGI ISS
PF00651 PFAM
BTB/POZ domain
JGI ISS
UniRef100_B9RTY8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RTY8_RICCO
SoyBase E_val: 0 ISS
UniRef100_I1N9H9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9H9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma19g33880
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma19g33880
Paralog Evidence Comments
Glyma03g31050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma19g33880 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.19g156400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma19g33880
Coding sequences of Glyma19g33880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma19g33880.1 sequence type=CDS gene model=Glyma19g33880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAAACCCTCACTATGCTGTTAGAAAAAGCTTGAAGCGCAAGCTCGAAGCAGATTTAATCCACACTTCCAAACAACTTCACCCAAAGATCTCTGCAAAGATTCTCCGACACGTCTCTCTCCTCAACTCCGCTCACCCATCCTCTGTCTCTGATTGTACTGCCATTAAGAGTGCTATTGATGCCCTATCTCTACTCGCTGAAAACGAGGATCTTGTGGATACTCTACTGAAATGCGGTGTCGTCCCCGCTCTGGTGAGGCATCTTCGATTGACAGACAACGCACGGAGAGATGACGGTGATGAGGCAGACTCTGTGAAAGATGACAGTGATGGCGTTACCAAACATTTTCAGTTTGAGGTCATCAAAGGATGCGCGGTCATCCTTGAGCTTCTTGCCATTGAAAAAGAGTATCAGCAACTCGTTGTGGATGCTGGAGCCTTGCCCTGTCTTGTTGATTGGTTAAGGATGCAAAAGATCAGTACTATTGCTCAACCACTTATTGACCTTCTAAAGAGAGTAGCTGATGCAATAACCAGCCTAGCCCATGAAAATACTGGCATTAAGACCCTAGTCAGGATGGAAGGTGGTATAGCTCCTCTTGTTGAATTGCTTGAATTCAATGACATAAAGGTACAGAGAGCAGCTGCACGGGCCTTGCGAACTCTTGCATTTAACAATGATGCTAATAAAAATCAGATTGTTGAATGCAATGCGTTACCCACTCTTGTACTAATGCTCCAATCAGAGGATCCTAAAGTACATTATGAGGCAGTTGGTGTGATTGGAAATCTGGTCCACTCTTCGCCAAATATTAAGAAAGAAGTTCTTCTAGCTGGTGCTTTACAACCTGTCATTTCTTCACTTAGTTCCTCCTGTCCGGAGAGCCAAAGAGAAGCAGCTCTTTTAATTGGTCAGTTTGCCACAACAGATTCAGATTGCAAGGTTCATATTGGCCAAAGAGGGGCTATTCCACCATTAGTTGATATGCTTAAGTCTCCAGATGTTGAGCTTCAGGAAATGTCAGCTTTTGCACTTGGGAGGTTGGCACAGGACTCACATAATCAAGCTGGTATTGCTCAAAGTGGAGGTATAGAGCCTCTGCTCAAACTTCTTGGCTCAAAGAAGGTTCCTGTCCAACAAAATGCTGTTTTTGCTCTCTATAGTCTTGTTGATAATGAGAACAATGTTGCAGACATTATTAAGAAGGATGGTTTTCAAAAACTGAAGGCTGGAAATTTCAGAAATCAACAAACTGGAGTGTGTGTAACAAAGACATTAAAAAGATTAGAGGAAAAGACTCAAGGGCGAGTGTTGAAACACCTAATACATCTTATACGCTTGGCGGAAGAAGCAGTTCAAAGACGTGTAGCTATTGCTCTTGCTTATTTATGTTCTCCTCATGATCGTAAAACTATATTCATTGACAATAATGGATTAAAATTGCTGCTGGATATTCTTAAATCTTCAAATGTAAAGCAGAAGAGTGATGCTTCAATGGCGCTTCACCAATTGGCTGCCAAAGCCAGTTCTTCTTTCTCTCTTTTTGACATCGCTCCTCCATCACCAACTCCCCAGATGTACTTGGGCGAGGAATATGTAAACAATCCTAAACTTTCTGATGTCACATTCCTGGTTGAAGGTAGAAGTTTCTATGCTCATAGAGATTGTTTAGTTTCTTCGGATATCTTTCGTGCAATGTTTGATGGCAGTTATAGGGAAAGGGAAGCCAAAAATATAGTGATTCCGAACATTAAATGGGATGTCTTTGAATTGATGATGAGATTTATATACACTGGAACAGTAGATGTCAATTTGGATATTGCTCAGGACCTGCTCAGAGCAGCAGATCAGTATCTTCTGGACGGCCTTAAGCGTATATGCGAATATGCTATTGCTCAGGAAATTTCTGAGGAAAATGTTTCACTACTGTACAAGATGTCAGAGGATTTCAATGCTACTTCATTAAAACATTCATGTATACTGTTTATGCTGGAGAAATTTGATAAACTGAGATCTGAACCATGGTATTGTCCTCTGGTTCGTCACATTTTACCAGACATATGCATGTTCTTCTCAACTTTACTTGTCAAGTCTCATCCAGCTGACTCATGA
Predicted protein sequences of Glyma19g33880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma19g33880.1 sequence type=predicted peptide gene model=Glyma19g33880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MENPHYAVRKSLKRKLEADLIHTSKQLHPKISAKILRHVSLLNSAHPSSVSDCTAIKSAIDALSLLAENEDLVDTLLKCGVVPALVRHLRLTDNARRDDGDEADSVKDDSDGVTKHFQFEVIKGCAVILELLAIEKEYQQLVVDAGALPCLVDWLRMQKISTIAQPLIDLLKRVADAITSLAHENTGIKTLVRMEGGIAPLVELLEFNDIKVQRAAARALRTLAFNNDANKNQIVECNALPTLVLMLQSEDPKVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVISSLSSSCPESQREAALLIGQFATTDSDCKVHIGQRGAIPPLVDMLKSPDVELQEMSAFALGRLAQDSHNQAGIAQSGGIEPLLKLLGSKKVPVQQNAVFALYSLVDNENNVADIIKKDGFQKLKAGNFRNQQTGVCVTKTLKRLEEKTQGRVLKHLIHLIRLAEEAVQRRVAIALAYLCSPHDRKTIFIDNNGLKLLLDILKSSNVKQKSDASMALHQLAAKASSSFSLFDIAPPSPTPQMYLGEEYVNNPKLSDVTFLVEGRSFYAHRDCLVSSDIFRAMFDGSYREREAKNIVIPNIKWDVFELMMRFIYTGTVDVNLDIAQDLLRAADQYLLDGLKRICEYAIAQEISEENVSLLYKMSEDFNATSLKHSCILFMLEKFDKLRSEPWYCPLVRHILPDICMFFSTLLVKSHPADS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
