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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G02790 | AT | Annotation by Michelle Graham. TAIR10: GTP-binding family protein | chr4:1247416-1249351 FORWARD LENGTH=372 | SoyBase | E_val: 3.00E-160 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006655 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylglycerol biosynthetic process | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chloroplast relocation | SoyBase | N/A | ISS |
| GO:0010027 | GO-bp | Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0034660 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| PTHR11089 | Panther | GTP-BINDING PROTEIN-RELATED | JGI | ISS | |
| PTHR11089:SF38 | Panther | JGI | ISS | ||
| PF01926 | PFAM | GTPase of unknown function | JGI | ISS | |
| UniRef100_B9S422 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Nucleolar GTP-binding protein, putative n=1 Tax=Ricinus communis RepID=B9S422_RICCO | SoyBase | E_val: 2.00E-178 | ISS |
| UniRef100_I1N9H7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9H7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g33870 not represented in the dataset |
Glyma19g33870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g31040 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g156300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g33870.2 sequence type=transcript gene model=Glyma19g33870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTCTTGTATTGCTTTAAGTATTTTCGCTGTCAGGCTAAAGTAGCTAACCCAATCTGTCTCGTAAGACAAAAAAAATCCACTCACTTCTCAATTGAGACGTCATCGGTTATCCTTCAGAAGTTCAGAATTATCGCAAAGCAAAGAAAGAAAAACTCGCGAGTGTTGTGGGCAGCGTGTTTGAAAACAGAAAAACGAAGAACAGAGAGTGATTAGTCGCATAGCACAGTGATGAGTGTTCAGCTATCAAGCTTATGGGTCCCCAATTCTCCACCAATACCTCAACACTTCGTTCCCAACCGTGGCAGATTCTCCGCATCAGCTCTCTCATCCCAATCCCCCACTATTCAGATAATTGGCGTGGGAGGCCCCAGTTGGAGGGAAAATGGATATGGAAACCCCAACAACAACAACTTGTTTGATGGGTGCCAAGGAGAGAGTGATCATTGGAGTGAGCTTGACACTGATCTTTATCACTGGACAAAGGCATTGCGCCCTGTGCAGTGGTTTCCTGGTCATATAGCAAAAGCAGAAAAAGAACTGAAGGAGCAGCTCAAGTTGATGGATGTTGTGATAGAGGTGCGGGATGGACGAATTCCGATGTCCACAAGTCATCCACAGATGGATCTATGGCTTGGAAATAGAAAGAGAATTTTAGTTTTAAATAGAGAAGACATGATATCAACTGCAGACCGCAATGCTTGGGCAGATTATTTTACTAGGAATGGCACAAAGGTTGTCTTCTCCAATGGGCAGCTTGGAATGGGAACGATGAAGCTTGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATGTTAAGCGTAGATCCAAAGGGCTACTTCCTCGTGCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAGTCATCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAGCAGCTCCTAGGCCAGGAGTCACAAGAGAATTGAGGTGGGTTCGTTTTGGGAAAGATCTTGAACTGCTGGACTCTCCTGGGATACTCCCAATGCGGATCAGTGATCAGTCCGCTGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGGTCCTACGATGTGGCCGATGTTGCTGCAATTCTTGTGCAGATGCTTTCGAAGCTTCCCACAGTAGGCAGAGATGCTCTTTGTAAAAGATACAAGATTGATGTAGATTGTCGAGATGGTAGAATATTCATAGAGAAGCTTGCCGTTCGAGTATTTAATGGAGATGTTCATCAAGCAGCATTCCGCGTCCTAGCAGATTTTAGAAAAGAGACGTCCTGGAACTGACTGTAGAAGACAACTCCACATGGTGTTGGATGAATATGGATATTGTGATTATGAATGACATTATGGAAGGGAAAGGTGAATGCTCCCTCAAGACAATCTTTGGATCCTCGGGGCACACGAAACAAAGGATTTGAAGCCATGGATGCTTCTTGTTATTACCTTGTAATTTGGTCTCTTTTGCATCTGTCTGACTGTCTGTATAGAACCATTATGCCATGGGATGGGAGTTCGTAGTCATGATGCACATATGTTGTAGTATATACTTAATTGTTGTAGTGAGATGTTTCTTAAAATTAGGGCAGATGCTTGTTGCACTTTTGGGATGGTCTTCAGCTCATATCGTTTAACCAGATAAACATGACTATGCCAAAGCAATAAGACAGTAAGACGATTCAATAGTTACATATACTACCTGATCTTACCCCCAAGGCTGTTGTCTCCTTTGAACATGGGTTCTGATTATGGGTCAAGGATTAATATACTTAAATTAATTAGAGATAACCCACACTTTTGTTCTTGAAAGCTGCAAGTTGTTTACCTTTGGCCCTAAGATACATGTTTGTACAATTTAGTCTCCGAAAATTTGAAATTATTTGCTAG
>Glyma19g33870.1 sequence type=CDS gene model=Glyma19g33870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGTTCAGCTATCAAGCTTATGGGTCCCCAATTCTCCACCAATACCTCAACACTTCGTTCCCAACCGTGGCAGATTCTCCGCATCAGCTCTCTCATCCCAATCCCCCACTATTCAGATAATTGGCGTGGGAGGCCCCAGTTGGAGGGAAAATGGATATGGAAACCCCAACAACAACAACTTGTTTGATGGGTGCCAAGGAGAGAGTGATCATTGGAGTGAGCTTGACACTGATCTTTATCACTGGACAAAGGCATTGCGCCCTGTGCAGTGGTTTCCTGGTCATATAGCAAAAGCAGAAAAAGAACTGAAGGAGCAGCTCAAGTTGATGGATGTTGTGATAGAGGTGCGGGATGGACGAATTCCGATGTCCACAAGTCATCCACAGATGGATCTATGGCTTGGAAATAGAAAGAGAATTTTAGTTTTAAATAGAGAAGACATGATATCAACTGCAGACCGCAATGCTTGGGCAGATTATTTTACTAGGAATGGCACAAAGGTTGTCTTCTCCAATGGGCAGCTTGGAATGGGAACGATGAAGCTTGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATGTTAAGCGTAGATCCAAAGGGCTACTTCCTCGTGCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAGTCATCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAGCAGCTCCTAGGCCAGGAGTCACAAGAGAATTGAGGTGGGTTCGTTTTGGGAAAGATCTTGAACTGCTGGACTCTCCTGGGATACTCCCAATGCGGATCAGTGATCAGTCCGCTGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGGTCCTACGATGTGGCCGATGTTGCTGCAATTCTTGTGCAGATGCTTTCGAAGCTTCCCACAGTAGGCAGAGATGCTCTTTGTAAAAGATACAAGATTGATGTAGATTGTCGAGATGGTAGAATATTCATAGAGAAGCTTGCCGTTCGAGTATTTAATGGAGATGTTCATCAAGCAGCATTCCGCGTCCTAGCAGATTTTAGAAAAGGTAAGTTTGGTTGGACTGCACTGGAGAGGCCTCCTAAGTGA >Glyma19g33870.2 sequence type=CDS gene model=Glyma19g33870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGTTCAGCTATCAAGCTTATGGGTCCCCAATTCTCCACCAATACCTCAACACTTCGTTCCCAACCGTGGCAGATTCTCCGCATCAGCTCTCTCATCCCAATCCCCCACTATTCAGATAATTGGCGTGGGAGGCCCCAGTTGGAGGGAAAATGGATATGGAAACCCCAACAACAACAACTTGTTTGATGGGTGCCAAGGAGAGAGTGATCATTGGAGTGAGCTTGACACTGATCTTTATCACTGGACAAAGGCATTGCGCCCTGTGCAGTGGTTTCCTGGTCATATAGCAAAAGCAGAAAAAGAACTGAAGGAGCAGCTCAAGTTGATGGATGTTGTGATAGAGGTGCGGGATGGACGAATTCCGATGTCCACAAGTCATCCACAGATGGATCTATGGCTTGGAAATAGAAAGAGAATTTTAGTTTTAAATAGAGAAGACATGATATCAACTGCAGACCGCAATGCTTGGGCAGATTATTTTACTAGGAATGGCACAAAGGTTGTCTTCTCCAATGGGCAGCTTGGAATGGGAACGATGAAGCTTGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATGTTAAGCGTAGATCCAAAGGGCTACTTCCTCGTGCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAGTCATCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAGCAGCTCCTAGGCCAGGAGTCACAAGAGAATTGAGGTGGGTTCGTTTTGGGAAAGATCTTGAACTGCTGGACTCTCCTGGGATACTCCCAATGCGGATCAGTGATCAGTCCGCTGCTATAAAACTTGCCATATGTGATGACATTGGAGAGAGGTCCTACGATGTGGCCGATGTTGCTGCAATTCTTGTGCAGATGCTTTCGAAGCTTCCCACAGTAGGCAGAGATGCTCTTTGTAAAAGATACAAGATTGATGTAGATTGTCGAGATGGTAGAATATTCATAGAGAAGCTTGCCGTTCGAGTATTTAATGGAGATGTTCATCAAGCAGCATTCCGCGTCCTAGCAGATTTTAGAAAAGAGACGTCCTGGAACTGA
>Glyma19g33870.1 sequence type=predicted peptide gene model=Glyma19g33870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSVQLSSLWVPNSPPIPQHFVPNRGRFSASALSSQSPTIQIIGVGGPSWRENGYGNPNNNNLFDGCQGESDHWSELDTDLYHWTKALRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDMISTADRNAWADYFTRNGTKVVFSNGQLGMGTMKLGRLAKELAADVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVAAILVQMLSKLPTVGRDALCKRYKIDVDCRDGRIFIEKLAVRVFNGDVHQAAFRVLADFRKGKFGWTALERPPK* >Glyma19g33870.2 sequence type=predicted peptide gene model=Glyma19g33870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSVQLSSLWVPNSPPIPQHFVPNRGRFSASALSSQSPTIQIIGVGGPSWRENGYGNPNNNNLFDGCQGESDHWSELDTDLYHWTKALRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDMISTADRNAWADYFTRNGTKVVFSNGQLGMGTMKLGRLAKELAADVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRELRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVAAILVQMLSKLPTVGRDALCKRYKIDVDCRDGRIFIEKLAVRVFNGDVHQAAFRVLADFRKETSWN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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