Glyma19g33840 - SoyBase

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Report for Sequence Feature Glyma19g33840

Feature Type:	gene_model
Chromosome:	Gm19
Start:	41461715
stop:	41464368
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_UPI000233ED23	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233ED23 related cluster n=1 Tax=unknown RepID=UPI000233ED23	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g33840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33840

Paralog	Evidence	Comments
Glyma03g31005	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g155900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g33840

Limit To All Plant Sequences

>Glyma19g33840.2   sequence type=transcript   gene model=Glyma19g33840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTGTTTGGCTTTTGAAGTTTGAACAGTATTTGCCTATTTGGTTTGCCGCTCCAAATCCCAATACACTCACTGTTGGTGACTCATAAAGGCACCGTCTTTGGATTCTCTTCCACTTCGTCTCTGCGACGCAAAAATGGGTCGAAAACGAGCTTCCAAAAACAGCGACAGGGTTCAAGCGTTGCCTACTGTTGTGGAACCACAGCCTTCCAATGGAAACATACAACTGCCAAGGGCACTAGAATCTCAGCTTGAAATCCCACTCCCTGGGCTTACCTCACCGAAGCATCCAAATTTGTTGGTGGGTAGAGCGGAAATGCGTCATGCAAAAAGCCCGGCGCAGGAGCAAGTGAACCAAGACCATGGGCATCAAAAGAAGCCTCCTACACCTGCTAAGAAAAAAATCAAATTCTGTGGTGCATCTGTGAGGCGATCAGAACGCATTAAAAGTTCAGTTGTCAATCACCCTAACACCAATTGTTACATTGAAGTCGTTGAGGATTTAACTGTTAGTGATGGTGAGAAAGATGAAGCAGATACTCAACTGGAGCAGGTATTGTTGGCAGAGCCAGAGATGGAGTTCGAGCTGCCGCTGGAGCACGAGCACGAGTCCGAGCCAGAGCTGGCAGATAATTTGGGAGAGAAGAAGAGTTGGAAAGAAAAAGTTGACTGTGCCTTGCAAAGAATAGAAGCTCTTGATAAGACAGTAGAATTGTTGAAATCCAAGGTAGATGAGAATATTGCCTTTTGTGAAGCCCCGTCTATGGCATCTATAAGTTACAAGAGCATGTATATTGACTCACAGAAGAAGATTGAAGCTTTAACAGTTGAAAATCAACGACTAAATGGAAAGCTGGAAAATGCTCTTGGCAAAATTGAAGCGTACGAAAAAGAGATCCGTGTTTTAGTGGATGTATTGGATAAAACGAAGGATGCTGTTAAGGATACTATGATTACAAATGTGGCAAAAACTATAGAAGCCGCTGTTAATGTATCAACTCAAGCAATGCAAATCCACAATGCGTGCTCTGCTTCTGCAGTTAAGAGAAAGAGAAATGAAAACTGAAGTAGGAAGCTAATGCTGCACGACTTATTCTTATGTATTGTAAAAAGTAGACACTTGACACCTAATGTGCTTGACCAGCTGACCTTGAGCCTGTGGTGCTTTTTAACCTTTTTTGCATGGATTTCTGCTTGTTAATGTGGTCATTTTAAATTCTCTGATTTTCATGTGTCTCTAGTTTTACCTGATGGTGCATAAAATTCATACATTCTGTTTTTGCGTTTTGTTTTTGTAGTATTGTTAAGTATTAATAGGAGAAAGAAATAGTTAGGCTTTAATGTTTTAAATCCTTAGA

Coding sequences of Glyma19g33840

Limit To All Plant Sequences

>Glyma19g33840.1   sequence type=CDS   gene model=Glyma19g33840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGAAAACGAGCTTCCAAAAACAGCGACAGGGTTCAAGCGTTGCCTACTGTTGTGGAACCACAGCCTTCCAATGGAAACATACAACTGCCAAGGGCACTAGAATCTCAGCTTGAAATCCCACTCCCTGGGCTTACCTCACCGAAGCATCCAAATTTGTTGGTGGGTAGAGCGGAAATGCGTCATGCAAAAAGCCCGGCGCAGGAGCAAGTGAACCAAGACCATGGGCATCAAAAGAAGCCTCCTACACCTGCTAAGAAAAAAATCAAATTCTGTGGTGCATCTGTGAGGCGATCAGAACGCATTAAAAGTTCAGTTGTCAATCACCCTAACACCAATTGTTACATTGAAGTCGTTGAGGATTTAACTGTTAGTGATGGTGAGAAAGATGAAGCAGATACTCAACTGGAGCAGGTATTGTTGGCAGAGCCAGAGATGGAGTTCGAGCTGCCGCTGGAGCACGAGCACGAGTCCGAGCCAGAGCTGGCAGATAATTTGGGAGAGAAGAAGAGTTGGAAAGAAAAAGTTGACTGTGCCTTGCAAAGAATAGAAGCTCTTGATAAGACAGTAGAATTGTTGAAATCCAAGGTAGATGAGAATATTGCCTTTTGTGAAGCCCCGTCTATGGCATCTATAAGTTACAAGAGCATGTATATTGACTCACAGAAGAAGATTGAAGCTTTAACAGTTGAAAATCAACGACTAAATGGAAAGCTGGAAAATGCTCTTGGCAAAATTGAAGCGGTATGTTTCAACATTAATATTCCTCCTCCATTTTGA

>Glyma19g33840.2   sequence type=CDS   gene model=Glyma19g33840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCGAAAACGAGCTTCCAAAAACAGCGACAGGGTTCAAGCGTTGCCTACTGTTGTGGAACCACAGCCTTCCAATGGAAACATACAACTGCCAAGGGCACTAGAATCTCAGCTTGAAATCCCACTCCCTGGGCTTACCTCACCGAAGCATCCAAATTTGTTGGTGGGTAGAGCGGAAATGCGTCATGCAAAAAGCCCGGCGCAGGAGCAAGTGAACCAAGACCATGGGCATCAAAAGAAGCCTCCTACACCTGCTAAGAAAAAAATCAAATTCTGTGGTGCATCTGTGAGGCGATCAGAACGCATTAAAAGTTCAGTTGTCAATCACCCTAACACCAATTGTTACATTGAAGTCGTTGAGGATTTAACTGTTAGTGATGGTGAGAAAGATGAAGCAGATACTCAACTGGAGCAGGTATTGTTGGCAGAGCCAGAGATGGAGTTCGAGCTGCCGCTGGAGCACGAGCACGAGTCCGAGCCAGAGCTGGCAGATAATTTGGGAGAGAAGAAGAGTTGGAAAGAAAAAGTTGACTGTGCCTTGCAAAGAATAGAAGCTCTTGATAAGACAGTAGAATTGTTGAAATCCAAGGTAGATGAGAATATTGCCTTTTGTGAAGCCCCGTCTATGGCATCTATAAGTTACAAGAGCATGTATATTGACTCACAGAAGAAGATTGAAGCTTTAACAGTTGAAAATCAACGACTAAATGGAAAGCTGGAAAATGCTCTTGGCAAAATTGAAGCGTACGAAAAAGAGATCCGTGTTTTAGTGGATGTATTGGATAAAACGAAGGATGCTGTTAAGGATACTATGATTACAAATGTGGCAAAAACTATAGAAGCCGCTGTTAATGTATCAACTCAAGCAATGCAAATCCACAATGCGTGCTCTGCTTCTGCAGTTAAGAGAAAGAGAAATGAAAACTGA

Predicted protein sequences of Glyma19g33840

Limit To All Plant Sequences

>Glyma19g33840.1   sequence type=predicted peptide   gene model=Glyma19g33840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKRASKNSDRVQALPTVVEPQPSNGNIQLPRALESQLEIPLPGLTSPKHPNLLVGRAEMRHAKSPAQEQVNQDHGHQKKPPTPAKKKIKFCGASVRRSERIKSSVVNHPNTNCYIEVVEDLTVSDGEKDEADTQLEQVLLAEPEMEFELPLEHEHESEPELADNLGEKKSWKEKVDCALQRIEALDKTVELLKSKVDENIAFCEAPSMASISYKSMYIDSQKKIEALTVENQRLNGKLENALGKIEAVCFNINIPPPF*

>Glyma19g33840.2   sequence type=predicted peptide   gene model=Glyma19g33840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKRASKNSDRVQALPTVVEPQPSNGNIQLPRALESQLEIPLPGLTSPKHPNLLVGRAEMRHAKSPAQEQVNQDHGHQKKPPTPAKKKIKFCGASVRRSERIKSSVVNHPNTNCYIEVVEDLTVSDGEKDEADTQLEQVLLAEPEMEFELPLEHEHESEPELADNLGEKKSWKEKVDCALQRIEALDKTVELLKSKVDENIAFCEAPSMASISYKSMYIDSQKKIEALTVENQRLNGKLENALGKIEAYEKEIRVLVDVLDKTKDAVKDTMITNVAKTIEAAVNVSTQAMQIHNACSASAVKRKRNEN*

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