SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G63150 | AT | Annotation by Michelle Graham. TAIR10: MIRO-related GTP-ase 2 | chr3:23329200-23332692 REVERSE LENGTH=643 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0007264 | GO-bp | Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0019725 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular homeostasis | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005741 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial outer membrane | SoyBase | N/A | ISS |
| GO:0003924 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTPase activity | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0005525 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GTP binding | SoyBase | N/A | ISS |
| KOG1707 | KOG | Predicted Ras related/Rac-GTP binding protein | JGI | ISS | |
| PTHR24072 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24072:SF12 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF08355 | PFAM | EF hand associated | JGI | ISS | |
| PF08356 | PFAM | EF hand associated | JGI | ISS | |
| PF08477 | PFAM | Miro-like protein | JGI | ISS | |
| UniRef100_I1N9H1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial Rho GTPase n=1 Tax=Glycine max RepID=I1N9H1_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_I1N9H1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Mitochondrial Rho GTPase n=1 Tax=Glycine max RepID=I1N9H1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma19g33810 not represented in the dataset |
Glyma19g33810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g30990 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g155700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g33810.1 sequence type=CDS gene model=Glyma19g33810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGAATCACTCAAGCAGCTTCGGCGGTCGCAGTGGAGTTCGAGTGGTGGTCGCCGGCGACCGCTCCACCGGAAAATCGAGCCTGATAGCCGCCATAGCGACGGAGTCATTCGCCGAGGCCGTTCCGCCGGTCCTTCCGCCCACCCTCCTGGCCCCTGATTTGTACCCCGACACCGTTCCTCTCACCGTCGTTGACACACCTTCCAGCTTGGAGAAGCAGAGAAAGCGTAATGAGGAATTGAAAGCAGCTGACGTTGTGGTGTTAACCTATGCTTGCAATGACACCGCGTCGTTTTCGCGGTTGAGTTCTTACTGGTTCCCGGAGCTGCAGAAGTTGGAGGTGAAGGTGCCTGTAATTGTGGTTGGTTGCAAGCTGGATCTTAGGGATGAAAGCCAGCAAGTGAGCTTGGAGTGTGTCATGACACAGCTCCTGCAACAGTTCAAGGAAATTGTCACCTGCATTGAATGCTCTGCTGCTACGCAATACCAGGTACCTGAAGTTTTTTATTTTGCTCAAAAAGCGGTACTTCATCCGATAGATCCTTTGTATGATCATGAAAGTCAAGCTTTAAAGGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGTGATCGTGACATGGATGAAGCCCTTAATGACACAGAACTAAATGAGTTTCAGGTTAGATGCTTCAATGCACCATTGCAATCCTCTGAAATAGCAGGAGTCAAAAGGGTTGTACAGCAGAAAGTACCTGAAGGATTCAACTCACATGGTCTTACTTTTCCTGGATTTATTTATGTCCACAATATGTTCCTCAAAAAAGGGCGTCCAGAGACATTATGGGCTGTTCTAAGAAACTTTGGATATGATAATAATTTGAAACTCATGGATGATTTCCTTCCTGTTCCATCTAAGCATGCTTTCGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAGTTTCTAAATGGTATCTTTCGACTGTTAGATACAGATAAAGATCGAGCCCTACGACCTGCTGAAGTTGATAAGTTATTTTGTACTGCACCAGAAAGTCCATGGGATGATGCTCTATATAAGGATGCTGCTGAGAGAACTAACATGGGTTACATATCTCTTAATGGATTCCTGGCGCAGTGGGTCCTTATGACATTACTTGATCCACCATGTAGCCTGGCTAATTTGATTTACATTGGATATAGTGGTAATCCAGCTGCTGCTCTTCGTGTTACCCGTAGAAGAGCAGTAGATCGCAAGAAGCAAGCAACAGAAAAGAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATGCTGGGAAGTCTGCTCTGTTGGATTCATTATTGGGAAGGCCTTTCTCAAACAATTATACTCCAACAACTGTTGAGAGGTTTGCAGCAAATTCCATTGAATTAATAGGGGGAACCAGAAAAACTCTTGTGTTGCGGGAGATACCAGAGAGTGAAGTATCGAATGTTTTGTCAAATAAGGGTTATTTGGCAGCATGTGATGTAGCTGTTTTTGTCTATGACAGCTCAGATGAACATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGGTAGACAAGGAGATCTAACTGGTTATAGAGTTCCTTGTCTCCTTATTGCCGCAAAGGATGATTTAACTCCATATCCAAGGGCAGTACAAGATTCAGTTAAGGTTACTGAGGAATTGGGAATAGAGGCACCTATTCATGTAAGTATGAAATTAGGCGATTCAAGTAACGTGTACCATAAGATTGTCAATGCTGCAGAGCACCCTCATTTAAGCATTCCAGAAACTGAGATTGGGAGGAAAAGAAAGCAATACCATCGGCTTCTTCAGCACTCTCTTGTTTTTGCCTCAGTTGGGACTGCTATGGCATTTGTTGGTTTGGCAGCATGTCGTGCATATGCAGTTAAAAAGAATTCCTCTGGTTAG
>Glyma19g33810.1 sequence type=predicted peptide gene model=Glyma19g33810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANHSSSFGGRSGVRVVVAGDRSTGKSSLIAAIATESFAEAVPPVLPPTLLAPDLYPDTVPLTVVDTPSSLEKQRKRNEELKAADVVVLTYACNDTASFSRLSSYWFPELQKLEVKVPVIVVGCKLDLRDESQQVSLECVMTQLLQQFKEIVTCIECSAATQYQVPEVFYFAQKAVLHPIDPLYDHESQALKDRCVRALRRIFVLCDRDMDEALNDTELNEFQVRCFNAPLQSSEIAGVKRVVQQKVPEGFNSHGLTFPGFIYVHNMFLKKGRPETLWAVLRNFGYDNNLKLMDDFLPVPSKHAFDQSVELTGEAVEFLNGIFRLLDTDKDRALRPAEVDKLFCTAPESPWDDALYKDAAERTNMGYISLNGFLAQWVLMTLLDPPCSLANLIYIGYSGNPAAALRVTRRRAVDRKKQATEKNVFQCYVFGSKNAGKSALLDSLLGRPFSNNYTPTTVERFAANSIELIGGTRKTLVLREIPESEVSNVLSNKGYLAACDVAVFVYDSSDEHSWKKSRDLLEKVGRQGDLTGYRVPCLLIAAKDDLTPYPRAVQDSVKVTEELGIEAPIHVSMKLGDSSNVYHKIVNAAEHPHLSIPETEIGRKRKQYHRLLQHSLVFASVGTAMAFVGLAACRAYAVKKNSSG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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