Glyma19g33760 - SoyBase

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Report for Sequence Feature Glyma19g33760

Feature Type:	gene_model
Chromosome:	Gm19
Start:	41347340
stop:	41350200
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33760

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G46610	AT	Annotation by Michelle Graham. TAIR10: Aluminium activated malate transporter family protein \| chr5:18913115-18915736 REVERSE LENGTH=543	SoyBase	E_val: 5.00E-84	ISS
GO:0010044	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to aluminum ion	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4711	KOG	Predicted membrane protein	JGI		ISS
PF11744	PFAM	Aluminium activated malate transporter	JGI		ISS
UniRef100_Q9LS22	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aluminum-activated malate transporter 14 n=1 Tax=Arabidopsis thaliana RepID=ALMTE_ARATH	SoyBase	E_val: 2.00E-81	ISS
UniRef100_UPI000233EFF7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EFF7 related cluster n=1 Tax=unknown RepID=UPI000233EFF7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g33760

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33760

Paralog	Evidence	Comments
Glyma03g30930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33760 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g155200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33760

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g33760

Limit To All Plant Sequences

>Glyma19g33760.2   sequence type=transcript   gene model=Glyma19g33760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTATAAAATTCCTACGAAGGAAAAAGGGAAAGGAATTGAGAGAGTAAAGACAAAAATGGAATCAACTCACGTACTAGCCATTACAAATGAAGAAGAGAATATTGCTCGTTCAAAAGAGAATAAAACATTCCAATTTCATCTTCCCCCCATCATTTCCCATCTTGGGAAAAATGAGGTCCACTGTGTCTCCATTACTTCCAATCCTAGACACAAGCAGATGCAAAGTGGTGGCCATGATATGAGGAAGATAATCCACTGCATCAAAGTGGGAATCTCCTTGGTTTTGGTTTCACTCCTGTACCTCTTGAATCCTCTCTTTAAGCAAGTTGGAGAAAATGCAATGTGGGCTATCATGACTGTTGTAGTCATGTTTGAATTCTCTGCAGGAGCCACAATTGGAAAGGGCTTCAATCGTGGACTAGGAACTATTATAGGAGGTGGACTAGGTTGCTTAGCAGCAGTTTTTGCCCAAAGCATTGGGATTGGCAGGCTTGGCAACTCAATTATTATTGGTGCTTCAGTATTTATATTTGGATCAGTTGCTACATATCTTCGACTGGTTCCAAGCATAAAGAAAAGATACGATTATGGGGTGATGATATTCATGCTCACATTCAATCTAGTTGTGGTTTCTGGCGTACGTGGGGATGTGAAAGTGTGGGACTTAGCCAGGGAGCGTCTCTTGAATATACTAATGGGCTTCATTGTGTGCGTTTGTGTGACTTTGTTTGTCTTCCCTTTGTGGGCTAGCGATGAACTTCATGATTCCACGGTCTCAAGATTCCTGGACCTTGCCAACACAATTCAAGTTTGTTTTGGGGAATGTACCAAAATCGTTAGTGGAAAGGAAAACCAACCTCGTGCTAGCTTCAACGTTTGCAAGTCAGTGTTGAACTCCAAGTCAAAGGACGAATCATTGGCAAATTTTGCAAAATGGGAACCCTGGCATGGAAAATTCGGATTTTCCTACCCTTGGGGAAGGTACTTAAAGATTGGTGAAGTTCTTCGAGAACTGGCTGCATTTATTCTTGCAGCGGGACGTTGCCTTGAAGCATCAAAAGAGGTAGGTCTATATTTTTCTCTCTTTTATTCTTTTTTTTTTAGGTCCATAAGTAAGTGTATCTTATAAACTTGCAAAACG

>Glyma19g33760.3   sequence type=transcript   gene model=Glyma19g33760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTATAAAATTCCTACGAAGGAAAAAGGGAAAGGAATTGAGAGAGTAAAGACAAAAATGGAATCAACTCACGTACTAGCCATTACAAATGAAGAAGAGAATATTGCTCGTTCAAAAGAGAATAAAACATTCCAATTTCATCTTCCCCCCATCATTTCCCATCTTGGGAAAAATGAGGTCCACTGTGTCTCCATTACTTCCAATCCTAGACACAAGCAGATGCAAAGTGGTGGCCATGATATGAGGAAGATAATCCACTGCATCAAAGTGGGAATCTCCTTGGTTTTGGTTTCACTCCTGTACCTCTTGAATCCTCTCTTTAAGCAAGTTGGAGAAAATGCAATGTGGGCTATCATGACTGTTGTAGTCATGTTTGAATTCTCTGCAGGAGCCACAATTGGAAAGGGCTTCAATCGTGGACTAGGAACTATTATAGGAGGTGGACTAGGTTGCTTAGCAGCAGTTTTTGCCCAAAGCATTGGGATTGGCAGGCTTGGCAACTCAATTATTATTGGTGCTTCAGTATTTATATTTGGATCAGTTGCTACATATCTTCGACTGGTTCCAAGCATAAAGAAAAGATACGATTATGGGGTGATGATATTCATGCTCACATTCAATCTAGTTGTGGTTTCTGGCGTACGTGGGGATGTGAAAGTGTGGGACTTAGCCAGGGAGCGTCTCTTGAATATACTAATGGGCTTCATTGTGTGCGTTTGTGTGACTTTGTTTGTCTTCCCTTTGTGGGCTAGCGATGAACTTCATGATTCCACGGTCTCAAGATTCCTGGACCTTGCCAACACAATTCAAGTTTGTTTTGGGGAATGTACCAAAATCGTTAGTGGAAAGGAAAACCAACCTCGTGCTAGCTTCAACGTTTGCAAGTCAGTGTTGAACTCCAAGTCAAAGGACGAATCATTGGCAAATTTTGCAAAATGGGAACCCTGGCATGGAAAATTCGGATTTTCCTACCCTTGGGGAAGGTACTTAAAGATTGGTGAAGTTCTTCGAGAACTGGCTGCATTTATTCTTGCAGCGGGACGTTGCCTTGAAGCATCAAAAGAGATTTGATGGGCTCACTTGTTTGGGTTCAATAAATCTTTTTTGTCAGCCCATGGCCTCTTTGAGACGGTCAAAATGGGTCCATTTAGAAACATGCGAAGCAGTTGAGTCAAAGGTTGTGTTTATTCTACGAGAACTTGGAGAAAGCATGAAGCAAATGAGGAAATGTGATGCAAAGGGCAACATTTCGGGCCAGTTGAAAAATGCAAGAGAAGATTTAAGCTTGATAATTTCCACATCTAAAATGGTGGAACTTGAGGATTGCCAAGTGCTAGCAATTGCTAGCTTCGTGTTCTTGCTCATGGAAGTGATAGGGAAGGTAGAGGAATTGGTGAAAGAGGTGGAGGAGCTCGAAGACATTGCTGGTTTTCGCACCACCACAACTTCATTGTCTTCGTAGAACCCATCTTTGTATACAATGATATTATGTAAAAACCACTTCCCAATTTTGGGTCATGAGTTAGAAATATG

Coding sequences of Glyma19g33760

Limit To All Plant Sequences

>Glyma19g33760.1   sequence type=CDS   gene model=Glyma19g33760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTATAAAATTCCTACGAAGGAAAAAGGGAAAGGAATTGAGAGAGTAAAGACAAAAATGGAATCAACTCACGTACTAGCCATTACAAATGAAGAAGAGAATATTGCTCGTTCAAAAGAGAATAAAACATTCCAATTTCATCTTCCCCCCATCATTTCCCATCTTGGGAAAAATGAGGTCCACTGTGTCTCCATTACTTCCAATCCTAGACACAAGCAGATGCAAAGTGGTGGCCATGATATGAGGAAGATAATCCACTGCATCAAAGTGGGAATCTCCTTGGTTTTGGTTTCACTCCTGTACCTCTTGAATCCTCTCTTTAAGCAAGTTGGAGAAAATGCAATGTGGGCTATCATGACTGTTGTAGTCATGTTTGAATTCTCTGCAGGAGCCACAATTGGAAAGGGCTTCAATCGTGGACTAGGAACTATTATAGGAGGTGGACTAGGTTGCTTAGCAGCAGTTTTTGCCCAAAGCATTGGGATTGGCAGGCTTGGCAACTCAATTATTATTGGTGCTTCAGTATTTATATTTGGATCAGTTGCTACATATCTTCGACTGGTTCCAAGCATAAAGAAAAGATACGATTATGGGGTGATGATATTCATGCTCACATTCAATCTAGTTGTGGTTTCTGGCGTACGTGGGGATGTGAAAGTGTGGGACTTAGCCAGGGAGCGTCTCTTGAATATACTAATGGGCTTCATTGTGTGCGTTTGTGTGACTTTGTTTGTCTTCCCTTTGTGGGCTAGCGATGAACTTCATGATTCCACGGTCTCAAGATTCCTGGACCTTGCCAACACAATTCAAGTTTGTTTTGGGGAATGTACCAAAATCGTTAGTGGAAAGGAAAACCAACCTCGTGCTAGCTTCAACGTTTGCAAGTCAGTGTTGAACTCCAAGTCAAAGGACGAATCATTGGCAAATTTTGCAAAATGGGAACCCTGGCATGGAAAATTCGGATTTTCCTACCCTTGGGGAAGGTACTTAAAGATTGGTGAAGTTCTTCGAGAACTGGCTGCATTTATTCTTGCAGCGGGACGTTGCCTTGAAGCATCAAAAGAGCCCATGGCCTCTTTGAGACGGTCAAAATGGGTCCATTTAGAAACATGCGAAGCAGTTGAGTCAAAGGTTGTGTTTATTCTACGAGAACTTGGAGAAAGCATGAAGCAAATGAGGAAATGTGATGCAAAGGGCAACATTTCGGGCCAGTTGAAAAATGCAAGAGAAGATTTAAGCTTGATAATTTCCACATCTAAAATGGTGGAACTTGAGGATTGCCAAGTGCTAGCAATTGCTAGCTTCGTGTTCTTGCTCATGGAAGTGATAGGGAAGGTAGAGGAATTGGTGAAAGAGGTGGAGGAGCTCGAAGACATTGCTGGTTTTCGCACCACCACAACTTCATTGTCTTCGTAG

>Glyma19g33760.2   sequence type=CDS   gene model=Glyma19g33760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTATAAAATTCCTACGAAGGAAAAAGGGAAAGGAATTGAGAGAGTAAAGACAAAAATGGAATCAACTCACGTACTAGCCATTACAAATGAAGAAGAGAATATTGCTCGTTCAAAAGAGAATAAAACATTCCAATTTCATCTTCCCCCCATCATTTCCCATCTTGGGAAAAATGAGGTCCACTGTGTCTCCATTACTTCCAATCCTAGACACAAGCAGATGCAAAGTGGTGGCCATGATATGAGGAAGATAATCCACTGCATCAAAGTGGGAATCTCCTTGGTTTTGGTTTCACTCCTGTACCTCTTGAATCCTCTCTTTAAGCAAGTTGGAGAAAATGCAATGTGGGCTATCATGACTGTTGTAGTCATGTTTGAATTCTCTGCAGGAGCCACAATTGGAAAGGGCTTCAATCGTGGACTAGGAACTATTATAGGAGGTGGACTAGGTTGCTTAGCAGCAGTTTTTGCCCAAAGCATTGGGATTGGCAGGCTTGGCAACTCAATTATTATTGGTGCTTCAGTATTTATATTTGGATCAGTTGCTACATATCTTCGACTGGTTCCAAGCATAAAGAAAAGATACGATTATGGGGTGATGATATTCATGCTCACATTCAATCTAGTTGTGGTTTCTGGCGTACGTGGGGATGTGAAAGTGTGGGACTTAGCCAGGGAGCGTCTCTTGAATATACTAATGGGCTTCATTGTGTGCGTTTGTGTGACTTTGTTTGTCTTCCCTTTGTGGGCTAGCGATGAACTTCATGATTCCACGGTCTCAAGATTCCTGGACCTTGCCAACACAATTCAAGTTTGTTTTGGGGAATGTACCAAAATCGTTAGTGGAAAGGAAAACCAACCTCGTGCTAGCTTCAACGTTTGCAAGTCAGTGTTGAACTCCAAGTCAAAGGACGAATCATTGGCAAATTTTGCAAAATGGGAACCCTGGCATGGAAAATTCGGATTTTCCTACCCTTGGGGAAGGTACTTAAAGATTGGTGAAGTTCTTCGAGAACTGGCTGCATTTATTCTTGCAGCGGGACGTTGCCTTGAAGCATCAAAAGAGGTAGGTCTATATTTTTCTCTCTTTTATTCTTTTTTTTTTAGGTCCATAAGTAAGTGTATCTTATAA

>Glyma19g33760.3   sequence type=CDS   gene model=Glyma19g33760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTATAAAATTCCTACGAAGGAAAAAGGGAAAGGAATTGAGAGAGTAAAGACAAAAATGGAATCAACTCACGTACTAGCCATTACAAATGAAGAAGAGAATATTGCTCGTTCAAAAGAGAATAAAACATTCCAATTTCATCTTCCCCCCATCATTTCCCATCTTGGGAAAAATGAGGTCCACTGTGTCTCCATTACTTCCAATCCTAGACACAAGCAGATGCAAAGTGGTGGCCATGATATGAGGAAGATAATCCACTGCATCAAAGTGGGAATCTCCTTGGTTTTGGTTTCACTCCTGTACCTCTTGAATCCTCTCTTTAAGCAAGTTGGAGAAAATGCAATGTGGGCTATCATGACTGTTGTAGTCATGTTTGAATTCTCTGCAGGAGCCACAATTGGAAAGGGCTTCAATCGTGGACTAGGAACTATTATAGGAGGTGGACTAGGTTGCTTAGCAGCAGTTTTTGCCCAAAGCATTGGGATTGGCAGGCTTGGCAACTCAATTATTATTGGTGCTTCAGTATTTATATTTGGATCAGTTGCTACATATCTTCGACTGGTTCCAAGCATAAAGAAAAGATACGATTATGGGGTGATGATATTCATGCTCACATTCAATCTAGTTGTGGTTTCTGGCGTACGTGGGGATGTGAAAGTGTGGGACTTAGCCAGGGAGCGTCTCTTGAATATACTAATGGGCTTCATTGTGTGCGTTTGTGTGACTTTGTTTGTCTTCCCTTTGTGGGCTAGCGATGAACTTCATGATTCCACGGTCTCAAGATTCCTGGACCTTGCCAACACAATTCAAGTTTGTTTTGGGGAATGTACCAAAATCGTTAGTGGAAAGGAAAACCAACCTCGTGCTAGCTTCAACGTTTGCAAGTCAGTGTTGAACTCCAAGTCAAAGGACGAATCATTGGCAAATTTTGCAAAATGGGAACCCTGGCATGGAAAATTCGGATTTTCCTACCCTTGGGGAAGGTACTTAAAGATTGGTGAAGTTCTTCGAGAACTGGCTGCATTTATTCTTGCAGCGGGACGTTGCCTTGAAGCATCAAAAGAGATTTGA

Predicted protein sequences of Glyma19g33760

Limit To All Plant Sequences

>Glyma19g33760.1   sequence type=predicted peptide   gene model=Glyma19g33760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYKIPTKEKGKGIERVKTKMESTHVLAITNEEENIARSKENKTFQFHLPPIISHLGKNEVHCVSITSNPRHKQMQSGGHDMRKIIHCIKVGISLVLVSLLYLLNPLFKQVGENAMWAIMTVVVMFEFSAGATIGKGFNRGLGTIIGGGLGCLAAVFAQSIGIGRLGNSIIIGASVFIFGSVATYLRLVPSIKKRYDYGVMIFMLTFNLVVVSGVRGDVKVWDLARERLLNILMGFIVCVCVTLFVFPLWASDELHDSTVSRFLDLANTIQVCFGECTKIVSGKENQPRASFNVCKSVLNSKSKDESLANFAKWEPWHGKFGFSYPWGRYLKIGEVLRELAAFILAAGRCLEASKEPMASLRRSKWVHLETCEAVESKVVFILRELGESMKQMRKCDAKGNISGQLKNAREDLSLIISTSKMVELEDCQVLAIASFVFLLMEVIGKVEELVKEVEELEDIAGFRTTTTSLSS*

>Glyma19g33760.2   sequence type=predicted peptide   gene model=Glyma19g33760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYKIPTKEKGKGIERVKTKMESTHVLAITNEEENIARSKENKTFQFHLPPIISHLGKNEVHCVSITSNPRHKQMQSGGHDMRKIIHCIKVGISLVLVSLLYLLNPLFKQVGENAMWAIMTVVVMFEFSAGATIGKGFNRGLGTIIGGGLGCLAAVFAQSIGIGRLGNSIIIGASVFIFGSVATYLRLVPSIKKRYDYGVMIFMLTFNLVVVSGVRGDVKVWDLARERLLNILMGFIVCVCVTLFVFPLWASDELHDSTVSRFLDLANTIQVCFGECTKIVSGKENQPRASFNVCKSVLNSKSKDESLANFAKWEPWHGKFGFSYPWGRYLKIGEVLRELAAFILAAGRCLEASKEVGLYFSLFYSFFFRSISKCIL*

>Glyma19g33760.3   sequence type=predicted peptide   gene model=Glyma19g33760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSYKIPTKEKGKGIERVKTKMESTHVLAITNEEENIARSKENKTFQFHLPPIISHLGKNEVHCVSITSNPRHKQMQSGGHDMRKIIHCIKVGISLVLVSLLYLLNPLFKQVGENAMWAIMTVVVMFEFSAGATIGKGFNRGLGTIIGGGLGCLAAVFAQSIGIGRLGNSIIIGASVFIFGSVATYLRLVPSIKKRYDYGVMIFMLTFNLVVVSGVRGDVKVWDLARERLLNILMGFIVCVCVTLFVFPLWASDELHDSTVSRFLDLANTIQVCFGECTKIVSGKENQPRASFNVCKSVLNSKSKDESLANFAKWEPWHGKFGFSYPWGRYLKIGEVLRELAAFILAAGRCLEASKEI*

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