Glyma19g33750 - SoyBase

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Report for Sequence Feature Glyma19g33750

Feature Type:	gene_model
Chromosome:	Gm19
Start:	41345217
stop:	41346003
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF01657	PFAM	Domain of unknown function DUF26	JGI		ISS
UniRef100_D9IWE0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Embryo-abundant protein n=1 Tax=Pinus pinaster RepID=D9IWE0_PINPS	SoyBase	E_val: 4.00E-13	ISS
UniRef100_I1N9G5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N9G5_SOYBN	SoyBase	E_val: 1.00E-94	ISS

Expression Patterns of Glyma19g33750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33750

Paralog	Evidence	Comments
Glyma03g30923	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g155100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma19g33750

Limit To All Plant Sequences

>Glyma19g33750.1   sequence type=CDS   gene model=Glyma19g33750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCATTAATCCAACAAAATATGCAACAATTGCGATTTGTTTGTTTTGCCTATGGAGTGTTGCTGAGTGTATCCCCAACACCAGCATCATCAATGTTCTCTGCAACAATGGGGTGTACACTTCTGGGGACCCTTTTGCTATTAGTCTAAGCTATGTTTTTGGGGACTTAGAGAAGGAAACACCAGCACAGAAGAATTATGACTACCACAACATTTCACCCTATCCTAATGCCTATGCCTATGGGCATGCTACTTGTAACCTTAATCTGACATCCTCTGATTGCAAAACATGTCTTGGTGCTGCTAAAGCGGCCTTGTTTAGCACATGCCAGACACCACGGATCGGGGCTCGTTCGGTGCTCTATGATTGTGCAATCAGGTACGAGCAATACCCATTTGACGATTAG

Predicted protein sequences of Glyma19g33750

Limit To All Plant Sequences

>Glyma19g33750.1   sequence type=predicted peptide   gene model=Glyma19g33750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGINPTKYATIAICLFCLWSVAECIPNTSIINVLCNNGVYTSGDPFAISLSYVFGDLEKETPAQKNYDYHNISPYPNAYAYGHATCNLNLTSSDCKTCLGAAKAALFSTCQTPRIGARSVLYDCAIRYEQYPFDD*

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