Glyma19g33730 - SoyBase

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Report for Sequence Feature Glyma19g33730

Feature Type:	gene_model
Chromosome:	Gm19
Start:	41332163
stop:	41337156
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma19g33730

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G06080	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF828) \| chr3:1834959-1837524 REVERSE LENGTH=469	SoyBase	E_val: 0	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PTHR13533	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13533:SF3	Panther	gb def: unknown protein [takifugu rubripes]	JGI		ISS
PF03005	PFAM	Arabidopsis proteins of unknown function	JGI		ISS
UniRef100_I1N9G3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N9G3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LDG2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F28L1.1 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LDG2_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma19g33730

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g33730

Paralog	Evidence	Comments
Glyma03g30910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g33730 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.19g154900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma19g33730

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma19g33730

Limit To All Plant Sequences

>Glyma19g33730.2   sequence type=transcript   gene model=Glyma19g33730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAGAGATAGTGGGTTGCTTCCACGTCTATTGGGCAATTAGGAATCCATGTCTTCCAGTTCACACATGATAAATAAATTGCCGCCCTTCCCCTCGCCTCACGCGTTCCCCAAACCCTCCCACACTTCCATAAACGGAAGATCACTACTTCCCCTTAAAAACAACACCTTTTTAACCTCCTCTCATTCATTCATTCTCTTCATTTCTCAACTCCTAACTTCATTACTTACCAGCAAACACAAATAGCAATAACCCCCCCAAAACCACTTTTTGAGAAGAAAAAAAAAAAAAAGAAGCTACTGTACACACTCCTTTCCTTCTCTGCCATTAATGCCTTTTTTTCCCCCCCCCCTCTCTGGGCCCCACCTTCCTCTCTTCCTCATCCTCACTCTCATTTGTGTGTCACAGCCCCCACCTCCTTTAAGCCTGAGTCGAGCATGAATGAATGAATGTTTTTTGTTCCTTCCTACCCAACGCGATGAGCAAGAGCGCAACAACACCAAAGGACTCAGGCGACAGCACCGTGACCCACTTGGATTTTCTCAAGAAATTCAAACGCTTTAACCCTCTCGAGTCTTCCTTGGGAGTACTAGCCTTCTTCTTCGTCGCTTCTCTCTTCATTGCCTGCTTCTTCTACTTGGATTACAAGGGCTTCCGCTCTAGAGGCACCACTATCATTGACTTGGATTTTTCATCATCATCATCTTCTTCTTCTTCTGTTTCTGTTTCTGTTTCTTCTGCCCCAGTTCAGTTTCTGAGCCAAGACGGTGATAAATGTGATATCTTTGATGGGAATTGGGTTTGGGATGAGACCTATCCCCTTTACCATTCCGTAAACTGTTCTTTCTTGGATCAAGGTTTTCGCTGCTCCGAGAATGGCAGGCCTGATACTTTCTACACCAAGTGGCGATGGCAACCCAAAGATTGCAACTTGCCCAGATTTGATGCAAGGAATATGTTGGAAAAGCTACGGGACAAGCGACTAGTGTTTGTTGGTGATTCGATTGGAAGGAATCAATGGGAATCACTCCTTTGTATGCTCTCTTCGGCAATTGCAAATAAGGCTAGGGTCTACGAGGTTAATGGGAACCCAATTACAAAGCATACAGGCTTCTTGGCATTTAAGTTTGAAGATTTCAACTGTACCATTGAATACTACAGATCACCATATCTTGTAGTGCAGGGACGGCCTCCTTCTGGTGCACCTGATGGGGTAAGAATGACTTTGAGAGTGGATCATATGGACTGGATTTCTCATAAGTGGAGAGATGCTGATGTGCTGATTCTCAATGCTGGACATTGGTGGAATTATGAGAAGACTGTCAAAACGGGTTGTTACTTCCAAATAGGGGAGGAAGTGAAGATGAATATGACTACAGAAGACGCATTCAGAAAATCAATAGAGACAGTAGTTGATTGGATTACCAATGAAGTAAACATAAACAAAACTTACGTCGTTTTCCGAACTTATGCTCCTGTCCATTTCAGGGGTGGTGACTGGAATACTGGTGGTGGTTGTCACTTGGAAACATTACCCGATTTAGGCTCCTTGCCAGCAGTATCTGACATCCATTTCAGAACTGTCGTTGATGTATTGTCAGAACGCACGAATAAATCAAAAGTTTTGAATCTGGACTTGCTTAATGTCACCCAAATGTCAATACGCAGGAGAGACGGCCATGCATCTATTTACTATATCGGACCAGACAGCACAGCCTCTATGCAGCGGCAAGACTGTAGCCATTGGTGCCTACCTGGTGTGCCTGATTCATGGAACGAGATTCTTTATGCACTTCTTCTCAAGCGGGAGGATATTTTTGAACGGAGACAGAATACAACAAAAATTTCTCAAGTTCCACCATAATTGGTCTATACAGTTTGCAGAGAATGTTCTAAGTTATACAAGTCCTTTCCCAACCCTTGCTGAATGAGGTGAAGTTGCAAGTTGAATTTGACATCTTTCTGGTGAACATATCTAGATGGGAACTTAATTTTTGAAGGTGAGTTTCAGTGATATCTTGTACAAAAAAGAAAAAAATAACCACCGAAATTCGAACTTGATTGATCAGAAGGCATACATCATCTTTTGTTGTAAATTTCATATGATGGTCGGAGTCCATGATGCAGCTGTTTGTTGTAAATTGTATGTAAAAAGAGATTGTTTTTTTGTTTTTGGTTAATTGTATTTTTATTTATATAGACAAATACCCTGGAGTAATTGATATGGATGATACTTGTTGGAGATACAGAAGATTATCGTGGCTCAGTCATCGATTCATACATGCAATCTGGATCAAGTTTCGAGATTTATTTGTATTTTCAAGTTCCTTAGAATAATACTAATGAATCATATACGTTATATTGTTGCTTTTCTTGAAATTGCCATTCTGCACTTTGCGTGAACCATACTTGGCAATGCCTTTGACTAATCGCGTTTGAGCTTAACAATTGGGGTTG

Coding sequences of Glyma19g33730

Limit To All Plant Sequences

>Glyma19g33730.1   sequence type=CDS   gene model=Glyma19g33730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGTTTTTTGTTCCTTCCTACCCAACGCGATGAGCAAGAGCGCAACAACACCAAAGGACTCAGGCGACAGCACCGTGACCCACTTGGATTTTCTCAAGAAATTCAAACGCTTTAACCCTCTCGAGTCTTCCTTGGGAGTACTAGCCTTCTTCTTCGTCGCTTCTCTCTTCATTGCCTGCTTCTTCTACTTGGATTACAAGGGCTTCCGCTCTAGAGGCACCACTATCATTGACTTGGATTTTTCATCATCATCATCTTCTTCTTCTTCTGTTTCTGTTTCTGTTTCTTCTGCCCCAGTTCAGTTTCTGAGCCAAGACGGTGATAAATGTGATATCTTTGATGGGAATTGGGTTTGGGATGAGACCTATCCCCTTTACCATTCCGTAAACTGTTCTTTCTTGGATCAAGGTTTTCGCTGCTCCGAGAATGGCAGGCCTGATACTTTCTACACCAAGTGGCGATGGCAACCCAAAGATTGCAACTTGCCCAGATTTGATGCAAGGAATATGTTGGAAAAGCTACGGGACAAGCGACTAGTGTTTGTTGGTGATTCGATTGGAAGGAATCAATGGGAATCACTCCTTTGTATGCTCTCTTCGGCAATTGCAAATAAGGCTAGGGTCTACGAGGTTAATGGGAACCCAATTACAAAGCATACAGGCTTCTTGGCATTTAAGTTTGAAGATTTCAACTGTACCATTGAATACTACAGATCACCATATCTTGTAGTGCAGGGACGGCCTCCTTCTGGTGCACCTGATGGGGTAAGAATGACTTTGAGAGTGGATCATATGGACTGGATTTCTCATAAGTGGAGAGATGCTGATGTGCTGATTCTCAATGCTGGACATTGGTGGAATTATGAGAAGACTGTCAAAACGGGTTGTTACTTCCAAATAGGGGAGGAAGTGAAGATGAATATGACTACAGAAGACGCATTCAGAAAATCAATAGAGACAGTAGTTGATTGGATTACCAATGAAGTAAACATAAACAAAACTTACGTCGTTTTCCGAACTTATGCTCCTGTCCATTTCAGGGGTGGTGACTGGAATACTGGTGGTGGTTGTCACTTGGAAACATTACCCGATTTAGGCTCCTTGCCAGCAGTATCTGACATCCATTTCAGAACTGTCGTTGATGTATTGTCAGAACGCACGAATAAATCAAAAGTTTTGAATCTGGACTTGCTTAATGTCACCCAAATGTCAATACGCAGGAGAGACGGCCATGCATCTATTTACTATATCGGACCAGACAGCACAGCCTCTATGCAGCGGCAAGACTGTAGCCATTGGTGCCTACCTGGTGTGCCTGATTCATGGAACGAGATTCTTTATGCACTTCTTCTCAAGCGGGAGGATATTTTTGAACGGAGACAGAATACAACAAAAATTTCTCAAGTTCCACCATAA

>Glyma19g33730.2   sequence type=CDS   gene model=Glyma19g33730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGTTTTTTGTTCCTTCCTACCCAACGCGATGAGCAAGAGCGCAACAACACCAAAGGACTCAGGCGACAGCACCGTGACCCACTTGGATTTTCTCAAGAAATTCAAACGCTTTAACCCTCTCGAGTCTTCCTTGGGAGTACTAGCCTTCTTCTTCGTCGCTTCTCTCTTCATTGCCTGCTTCTTCTACTTGGATTACAAGGGCTTCCGCTCTAGAGGCACCACTATCATTGACTTGGATTTTTCATCATCATCATCTTCTTCTTCTTCTGTTTCTGTTTCTGTTTCTTCTGCCCCAGTTCAGTTTCTGAGCCAAGACGGTGATAAATGTGATATCTTTGATGGGAATTGGGTTTGGGATGAGACCTATCCCCTTTACCATTCCGTAAACTGTTCTTTCTTGGATCAAGGTTTTCGCTGCTCCGAGAATGGCAGGCCTGATACTTTCTACACCAAGTGGCGATGGCAACCCAAAGATTGCAACTTGCCCAGATTTGATGCAAGGAATATGTTGGAAAAGCTACGGGACAAGCGACTAGTGTTTGTTGGTGATTCGATTGGAAGGAATCAATGGGAATCACTCCTTTGTATGCTCTCTTCGGCAATTGCAAATAAGGCTAGGGTCTACGAGGTTAATGGGAACCCAATTACAAAGCATACAGGCTTCTTGGCATTTAAGTTTGAAGATTTCAACTGTACCATTGAATACTACAGATCACCATATCTTGTAGTGCAGGGACGGCCTCCTTCTGGTGCACCTGATGGGGTAAGAATGACTTTGAGAGTGGATCATATGGACTGGATTTCTCATAAGTGGAGAGATGCTGATGTGCTGATTCTCAATGCTGGACATTGGTGGAATTATGAGAAGACTGTCAAAACGGGTTGTTACTTCCAAATAGGGGAGGAAGTGAAGATGAATATGACTACAGAAGACGCATTCAGAAAATCAATAGAGACAGTAGTTGATTGGATTACCAATGAAGTAAACATAAACAAAACTTACGTCGTTTTCCGAACTTATGCTCCTGTCCATTTCAGGGGTGGTGACTGGAATACTGGTGGTGGTTGTCACTTGGAAACATTACCCGATTTAGGCTCCTTGCCAGCAGTATCTGACATCCATTTCAGAACTGTCGTTGATGTATTGTCAGAACGCACGAATAAATCAAAAGTTTTGAATCTGGACTTGCTTAATGTCACCCAAATGTCAATACGCAGGAGAGACGGCCATGCATCTATTTACTATATCGGACCAGACAGCACAGCCTCTATGCAGCGGCAAGACTGTAGCCATTGGTGCCTACCTGGTGTGCCTGATTCATGGAACGAGATTCTTTATGCACTTCTTCTCAAGCGGGAGGATATTTTTGAACGGAGACAGAATACAACAAAAATTTCTCAAGTTCCACCATAA

Predicted protein sequences of Glyma19g33730

Limit To All Plant Sequences

>Glyma19g33730.1   sequence type=predicted peptide   gene model=Glyma19g33730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVFCSFLPNAMSKSATTPKDSGDSTVTHLDFLKKFKRFNPLESSLGVLAFFFVASLFIACFFYLDYKGFRSRGTTIIDLDFSSSSSSSSSVSVSVSSAPVQFLSQDGDKCDIFDGNWVWDETYPLYHSVNCSFLDQGFRCSENGRPDTFYTKWRWQPKDCNLPRFDARNMLEKLRDKRLVFVGDSIGRNQWESLLCMLSSAIANKARVYEVNGNPITKHTGFLAFKFEDFNCTIEYYRSPYLVVQGRPPSGAPDGVRMTLRVDHMDWISHKWRDADVLILNAGHWWNYEKTVKTGCYFQIGEEVKMNMTTEDAFRKSIETVVDWITNEVNINKTYVVFRTYAPVHFRGGDWNTGGGCHLETLPDLGSLPAVSDIHFRTVVDVLSERTNKSKVLNLDLLNVTQMSIRRRDGHASIYYIGPDSTASMQRQDCSHWCLPGVPDSWNEILYALLLKREDIFERRQNTTKISQVPP*

>Glyma19g33730.2   sequence type=predicted peptide   gene model=Glyma19g33730   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNVFCSFLPNAMSKSATTPKDSGDSTVTHLDFLKKFKRFNPLESSLGVLAFFFVASLFIACFFYLDYKGFRSRGTTIIDLDFSSSSSSSSSVSVSVSSAPVQFLSQDGDKCDIFDGNWVWDETYPLYHSVNCSFLDQGFRCSENGRPDTFYTKWRWQPKDCNLPRFDARNMLEKLRDKRLVFVGDSIGRNQWESLLCMLSSAIANKARVYEVNGNPITKHTGFLAFKFEDFNCTIEYYRSPYLVVQGRPPSGAPDGVRMTLRVDHMDWISHKWRDADVLILNAGHWWNYEKTVKTGCYFQIGEEVKMNMTTEDAFRKSIETVVDWITNEVNINKTYVVFRTYAPVHFRGGDWNTGGGCHLETLPDLGSLPAVSDIHFRTVVDVLSERTNKSKVLNLDLLNVTQMSIRRRDGHASIYYIGPDSTASMQRQDCSHWCLPGVPDSWNEILYALLLKREDIFERRQNTTKISQVPP*

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