SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G03270 | AT | Annotation by Michelle Graham. TAIR10: CBS domain-containing protein with a domain of unknown function (DUF21) | chr1:799191-802436 FORWARD LENGTH=499 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2118 | KOG | Predicted membrane protein, contains two CBS domains | JGI | ISS | |
| PTHR12064 | Panther | ANCIENT CONSERVED DOMAIN PROTEIN-RELATED | JGI | ISS | |
| PTHR12064:SF2 | Panther | CYCLIN-RELATED | JGI | ISS | |
| PF01595 | PFAM | Domain of unknown function DUF21 | JGI | ISS | |
| UniRef100_B6SVJ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hemolysin n=1 Tax=Zea mays RepID=B6SVJ7_MAIZE | SoyBase | E_val: 3.00E-147 | ISS |
| UniRef100_UPI000233EFF2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EFF2 related cluster n=1 Tax=unknown RepID=UPI000233EFF2 | SoyBase | E_val: 0 | ISS |
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Glyma19g33660 not represented in the dataset |
Glyma19g33660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma03g30820 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.19g154200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma19g33660.1 sequence type=CDS gene model=Glyma19g33660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTTGCATGAGCTGAACCTTGGTATGAGGGAGTTCCAACCAGGGAACTTCGTGTACGATGCTGAGGATATTCCATTTGGGACGCTGTGGTGGTTCTTTTATGCTGGAATCTCTTGTTTGCTCGTTCTATTCGCTGGGATCATGTCTGGTCTCACCCTTGGATTAATGTCTCTGGGTCTCGTTGATCTTGAGATTCTCCAACAGAGTGGCTCCTCCACTGAGAAGAAACAAGCTGCTGCTATTTTGCCGGTTGTACAGAAACAGCATCAGCTTCTTGTGACCTTGCTTCTTTGTAACGCCTGTGCCATGGAGGCACTTCCAATTTACCTTGACAAGATTTTTCATCCCTTTGTAGCAGTAGTGTTATCTGTGACTTTTGTTCTAGCTTTTGGAGAGGTTATCCCACAAGCTATATGCACAAGATATGGACTCTATGTTGGTGCTAATTTTGTGGGGCTTGTGCGTGTCCTGATGATCATCTGTTATCCAATTGCTTACCCTATTGGAAAGGTTCTGGATGTTTTACTTGGACACGATCATGCACTGTTTAGGCGAGCACAGCTGAAAGCCCTTGTTTCAATCCATAGCCAAGAGGCTGGTAAAGGAGGTGAACTCACTCATGATGAGGCAACAATTATCAGTGGAGCACTAGATCTCACAGAGAAGACTGCAGAGGAGGCTATGACACCAATTGAATCTACATTTTCCTTGGATGTTGCTTCCAAATTGGACTGGGAAGCAATTGGGAAAATTCTTGCACGAGGTCATAGTCGTGTTCCTGTATACAGTGGAAACCCCAAAAATATAATTGGCCTCTTACTAGTAAAAAACCTTCTTACTGTAAGAGCTGAAACAGAGACTCCAGTTAGTGCTGTTTCCATCCGGAGAATTCCTAGGGTTCCAGCAGATATGCCTCTATATGATATCCTCAATGAGTTTCAAAAAGGAAGCAGTCATATGGCAGCTGTAGTTAAGGTTATAAGAGAGAGAAACAACCCTCAGTCACCCAATGACACTGAGAAATCCAAGGATAAGGAAGTCATCAAACATAATTCTCAACTAACTATCCCATTGCTATCCAGGTTTTATGAAAAATCAGAAAATGTTGTCAATATTGACAAACCCAAGCTTGCTGCAGACCAACAGTTTCAAAAGGATGGCCCTGCAACAAATGGTGTTTACCACTCTCTTGACAATGCTGAAGATGGGGAGGAAGTTATTGGCATCATTACGCTGGAGGACGTGTTTGAAGAACTCCTGCAGGAAGAAATTGTGGACGAGACTGATGTGTATATAGATGTACATAGAAGAATACGTGTGGCTGCTGTGGCAGCTGCTACATCTGTGGCACGAGTTCCTTCTGGCCGAAAGTTAACAGGTCACAAGCCTATAGTAAGTTAG
>Glyma19g33660.1 sequence type=predicted peptide gene model=Glyma19g33660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLLHELNLGMREFQPGNFVYDAEDIPFGTLWWFFYAGISCLLVLFAGIMSGLTLGLMSLGLVDLEILQQSGSSTEKKQAAAILPVVQKQHQLLVTLLLCNACAMEALPIYLDKIFHPFVAVVLSVTFVLAFGEVIPQAICTRYGLYVGANFVGLVRVLMIICYPIAYPIGKVLDVLLGHDHALFRRAQLKALVSIHSQEAGKGGELTHDEATIISGALDLTEKTAEEAMTPIESTFSLDVASKLDWEAIGKILARGHSRVPVYSGNPKNIIGLLLVKNLLTVRAETETPVSAVSIRRIPRVPADMPLYDILNEFQKGSSHMAAVVKVIRERNNPQSPNDTEKSKDKEVIKHNSQLTIPLLSRFYEKSENVVNIDKPKLAADQQFQKDGPATNGVYHSLDNAEDGEEVIGIITLEDVFEELLQEEIVDETDVYIDVHRRIRVAAVAAATSVARVPSGRKLTGHKPIVS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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